BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0889400 Os01g0889400|AK071407
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LE... 351 3e-97
Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LE... 227 7e-60
Os01g0169400 Similar to LOB domain protein 25 150 1e-36
Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein 149 3e-36
Os02g0318700 129 2e-30
Os05g0346800 Similar to LOB domain protein 3 124 6e-29
Os12g0106200 Similar to LOB domain protein 4 123 2e-28
Os11g0106900 Lateral organ boundaries, LOB domain containin... 123 2e-28
Os05g0165450 Lateral organ boundaries, LOB domain containin... 120 1e-27
Os01g0825000 Similar to LOB domain protein 12 117 1e-26
Os03g0287400 Similar to LOB domain protein 4 115 4e-26
Os03g0149000 Similar to LOB domain protein 31 105 3e-23
Os02g0820500 Similar to LOB domain protein 17 103 9e-23
Os10g0162600 Lateral organ boundaries, LOB domain containin... 100 8e-22
Os03g0149100 Adventitious rootless1 (LOB domain protein) 100 2e-21
Os03g0246900 Similar to LOB domain protein 16 100 2e-21
Os08g0402100 Lateral organ boundaries, LOB domain containin... 98 5e-21
Os08g0563400 Similar to LOB domain protein 17 95 5e-20
Os01g0772100 Lateral organ boundaries, LOB domain containin... 85 6e-17
Os01g0571500 81 8e-16
Os01g0572800 78 6e-15
Os08g0517100 Similar to ASYMMETRIC LEAVES2 protein (LOB dom... 69 4e-12
>Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 269
Score = 351 bits (901), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 176/232 (75%), Positives = 176/232 (75%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS
Sbjct: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
Query: 98 LAYEADMRLRDPVYGCVAIISIXXXXXXXXXXXXXXAKFELSKYQQXXXXXXXXXXXTGT 157
LAYEADMRLRDPVYGCVAIISI AKFELSKYQQ TGT
Sbjct: 98 LAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGT 157
Query: 158 NNGPHSMAEFIGNAVPNGAQSFINXXXXXXXXXXXXXXXCFGQEQQFSAVHMLSRSYEGE 217
NNGPHSMAEFIGNAVPNGAQSFIN CFGQEQQFSAVHMLSRSYEGE
Sbjct: 158 NNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGE 217
Query: 218 PIARLGGNGGYEFGYSTXXXXXXXXXXXXXXXXAPFLKSGIAGSDERQGAGQ 269
PIARLGGNGGYEFGYST APFLKSGIAGSDERQGAGQ
Sbjct: 218 PIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ 269
>Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 279
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/245 (54%), Positives = 146/245 (59%), Gaps = 17/245 (6%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS
Sbjct: 39 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 98
Query: 98 LAYEADMRLRDPVYGCVAIISIXXXXXXXXXXXXXXAKFELSKYQQXXXXXXXXXXXTGT 157
LAYEADMRLRDPVYGCV +IS+ A+FELSKYQ G
Sbjct: 99 LAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDLSRARFELSKYQ----AAVAVSSSNGQ 154
Query: 158 NNGPHSMAE-FIGNAV-PNGAQSFINXXXXXXXXXXXXXXXC---FGQEQQFSAVHMLSR 212
+M + FIG+AV PN Q+FI+ QFSAV ML+R
Sbjct: 155 AAAAAAMVDHFIGSAVQPNCTQNFISGGGVAAAAIGIGGGAGGGFVNDHHQFSAVQMLAR 214
Query: 213 SYEGEP-IARLG------GNGGYEFGYSTXXXXXXX-XXXXXXXXXAPFLKSGIAGSDER 264
SY+GE +ARLG G GGYEFGYS+ FLK G AG +R
Sbjct: 215 SYDGESAVARLGGAVNVSGGGGYEFGYSSAMGGAGGPMSGLGPLGGGTFLKPGTAGGGDR 274
Query: 265 QGAGQ 269
A Q
Sbjct: 275 PTAAQ 279
>Os01g0169400 Similar to LOB domain protein 25
Length = 251
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 79/104 (75%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCAACKFLRRKC P CVFAPYFPP+ PQKF +VH+VFGASNVTKLLNEL P+QREDAV+S
Sbjct: 30 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSS 89
Query: 98 LAYEADMRLRDPVYGCVAIISIXXXXXXXXXXXXXXAKFELSKY 141
LAYEA+ R++DPVYGCV IS+ A EL +Y
Sbjct: 90 LAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDTAHAELLRY 133
>Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein
Length = 340
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/104 (68%), Positives = 77/104 (74%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCAACK LRRKC CVFAPYFPPD P KF +VH+VFGASNVTKLLN+L P QREDAVNS
Sbjct: 40 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTKLLNDLQPEQREDAVNS 99
Query: 98 LAYEADMRLRDPVYGCVAIISIXXXXXXXXXXXXXXAKFELSKY 141
LAYEA+ RLRDPVYGCVA ISI A+ EL+ Y
Sbjct: 100 LAYEAEARLRDPVYGCVAYISILQLRIKQVRDQIVDARKELAAY 143
>Os02g0318700
Length = 335
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/115 (61%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 155 TGTNNGPHSMAEFIGNAVPNGAQSFINXXXXXXXXXXXXXXXCFGQEQQFSAVHMLSRSY 214
TGTN GPH MAEFIGNAVPNG QSFIN CF QEQ FS VHMLSRSY
Sbjct: 223 TGTN-GPHLMAEFIGNAVPNGTQSFINVGHSAALASVGGKVACFWQEQ-FSTVHMLSRSY 280
Query: 215 EGEPIARLGGNGGYEFGYSTXXXXXXXXXXXXXXXXAPFLKSGIAGSDERQGAGQ 269
EGEPI RLGGNGGYEF YST PFLKSGIAGS++ QGA Q
Sbjct: 281 EGEPIVRLGGNGGYEFRYSTSLAGSGHMSGLGAQGGTPFLKSGIAGSEKWQGAAQ 335
>Os05g0346800 Similar to LOB domain protein 3
Length = 200
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 65/81 (80%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCA+CK LRR+C DC+FAP+FP D+P KF VH+VFGASNV+K+L EL QR DAV+S
Sbjct: 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQRGDAVSS 65
Query: 98 LAYEADMRLRDPVYGCVAIIS 118
L YEA+ R+RDPVYGCV IS
Sbjct: 66 LVYEANARMRDPVYGCVGAIS 86
>Os12g0106200 Similar to LOB domain protein 4
Length = 156
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 66/81 (81%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCA+CK LRR+C +CVFAPYFP + Q+F VHRVFGASNV+K+L ++ P QR DAV+S
Sbjct: 9 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSS 68
Query: 98 LAYEADMRLRDPVYGCVAIIS 118
L YEA+ R+RDPVYGCVA IS
Sbjct: 69 LVYEANARMRDPVYGCVAAIS 89
>Os11g0106900 Lateral organ boundaries, LOB domain containing protein
Length = 156
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 66/81 (81%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCA+CK LRR+C +CVFAPYFP + Q+F VHRVFGASNV+K+L ++ P QR DAV+S
Sbjct: 9 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSS 68
Query: 98 LAYEADMRLRDPVYGCVAIIS 118
L YEA+ R+RDPVYGCVA IS
Sbjct: 69 LVYEANARMRDPVYGCVAAIS 89
>Os05g0165450 Lateral organ boundaries, LOB domain containing protein
Length = 241
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCAACK LRR+C +C F+PYF P P KF VH+VFGASNV+K+L E+H QR DA NS
Sbjct: 61 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANS 120
Query: 98 LAYEADMRLRDPVYGCV-AIISI 119
L YEA++RLRDPVYGC+ AI+++
Sbjct: 121 LVYEANLRLRDPVYGCMGAILTL 143
>Os01g0825000 Similar to LOB domain protein 12
Length = 251
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 63/82 (76%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCAACK LRR+C +C FAPYF P P KF VH+VFGASNV+K+L E+ +R DA +S
Sbjct: 59 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASS 118
Query: 98 LAYEADMRLRDPVYGCVAIISI 119
L YEA++RLRDPVYGC+ IS+
Sbjct: 119 LVYEANLRLRDPVYGCMGAISM 140
>Os03g0287400 Similar to LOB domain protein 4
Length = 239
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/80 (63%), Positives = 57/80 (71%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
PCAACK LRR+C CV APYFPP P KF HRVFGASN+ KLL EL R DAV+S
Sbjct: 63 PCAACKVLRRRCADGCVLAPYFPPTEPTKFTTAHRVFGASNIIKLLQELPESARADAVSS 122
Query: 98 LAYEADMRLRDPVYGCVAII 117
+ YEA+ RLRDPVYGC +
Sbjct: 123 MVYEAEARLRDPVYGCAGAV 142
>Os03g0149000 Similar to LOB domain protein 31
Length = 185
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 38 PCAACKFLRRKCQPDCVFAPYF-PPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96
PC ACKFLRRKC +CVFAPYF D +F +H+VFGASN KLL ++ P R +
Sbjct: 13 PCGACKFLRRKCAAECVFAPYFCAEDGAAQFAAIHKVFGASNAAKLLQQVAPGDRSEVAA 72
Query: 97 SLAYEADMRLRDPVYGCVAII 117
++ YEA RLRDPVYGCVA I
Sbjct: 73 TVTYEAQARLRDPVYGCVAHI 93
>Os02g0820500 Similar to LOB domain protein 17
Length = 216
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDN-PQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96
PC ACKFLRR+C P+CVFAPYF + +F +H+VFGASN +KLL+ L R +AV
Sbjct: 21 PCGACKFLRRRCVPECVFAPYFSSEQGAARFAAIHKVFGASNASKLLSHLPVADRCEAVV 80
Query: 97 SLAYEADMRLRDPVYGCVAII 117
++ YEA RLRDPVYGCVA I
Sbjct: 81 TITYEAQARLRDPVYGCVAQI 101
>Os10g0162600 Lateral organ boundaries, LOB domain containing protein
Length = 269
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPD-NPQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96
PC ACKFLRRKC C+FAPYF + F VH+VFGASNV+KLL ++ ++R DAV
Sbjct: 33 PCGACKFLRRKCVQGCIFAPYFDSEAGAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVV 92
Query: 97 SLAYEADMRLRDPVYGCVAII 117
++ YEA RLRDPVYGCVA I
Sbjct: 93 TICYEAQARLRDPVYGCVAHI 113
>Os03g0149100 Adventitious rootless1 (LOB domain protein)
Length = 259
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDN-PQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96
PC ACKFLRRKC CVFAPYF + F +H+VFGASNV+KLL L R +A
Sbjct: 7 PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66
Query: 97 SLAYEADMRLRDPVYGCVAII 117
+++YEA RLRDP+YGCVA I
Sbjct: 67 TISYEAQARLRDPIYGCVAHI 87
>Os03g0246900 Similar to LOB domain protein 16
Length = 275
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 60/82 (73%), Gaps = 5/82 (6%)
Query: 39 CAACKFLRRKCQPDCVFAPYFPPDNPQ---KFVHVHRVFGASNVTKLLNELHPYQREDAV 95
C ACKFLRRKC C+FAPYF D+ Q F VH+VFGASNV+KLL ++ ++R DAV
Sbjct: 38 CGACKFLRRKCVSGCIFAPYF--DSEQGAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAV 95
Query: 96 NSLAYEADMRLRDPVYGCVAII 117
++ YEA RLRDPVYGCVA I
Sbjct: 96 VTICYEAQARLRDPVYGCVAHI 117
>Os08g0402100 Lateral organ boundaries, LOB domain containing protein
Length = 426
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%)
Query: 39 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSL 98
CAACK+ RRKC PDC APYFP D ++F++ HR+FG SN+ K L L P +DA+ +L
Sbjct: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
Query: 99 AYEADMRLRDPVYGCVAII 117
Y+A+MR DPV GC +I
Sbjct: 118 IYQAEMRAHDPVGGCCRVI 136
>Os08g0563400 Similar to LOB domain protein 17
Length = 215
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDN-PQKFVHVHRVFGASNVTKLLNELHPYQREDAVN 96
PC ACKFLRRKC CVFAPYF + F +H+VFGASN +K+L L R +A
Sbjct: 7 PCGACKFLRRKCVKGCVFAPYFCHEQGAAHFAAIHKVFGASNASKILMHLPVSDRCEAAV 66
Query: 97 SLAYEADMRLRDPVYGCVAII 117
+++YEA RLRDP+YGCVA I
Sbjct: 67 TMSYEAQARLRDPIYGCVAHI 87
>Os01g0772100 Lateral organ boundaries, LOB domain containing protein
Length = 175
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 52/96 (54%), Gaps = 16/96 (16%)
Query: 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQK----------------FVHVHRVFGASNVTK 81
PC ACKFLRR+C P CVFAP+F F VHRVFGASNV K
Sbjct: 38 PCGACKFLRRRCVPGCVFAPHFSGCGGSGVGAGVGGRGRERGAAEFAAVHRVFGASNVAK 97
Query: 82 LLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAII 117
LL+ + R +A ++ YEA R+ DPVYG V I
Sbjct: 98 LLSRVPAALRREAARTVCYEAQARIADPVYGSVGTI 133
>Os01g0571500
Length = 356
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 39 CAACKFLRRKCQPDCVFAPYFPPDNP-QKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
CAAC++L R C P+C+ APYFP P +F +VHR+F +NV +++ E +R+D + +
Sbjct: 175 CAACRYLSRSCWPECLLAPYFPAGQPPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAA 234
Query: 98 LAYEADMRLRDPVYGCVAII 117
+ YEAD RDP YG ++
Sbjct: 235 IVYEADAWARDPRYGVAGVV 254
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 39 CAACKFLRRKCQPD-CVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 97
CAACKFLRR C P+ C AP+FP P++ V RVFG V +L ++ P +D ++S
Sbjct: 23 CAACKFLRRACSPEECRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSS 82
Query: 98 LAYEADMRLRDPVYGCVAII 117
+ YEA+ RDPV+G ++
Sbjct: 83 IVYEAEAWGRDPVWGPTGVV 102
>Os01g0572800
Length = 251
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 39 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSL 98
CAACK RR+C P+C A YFP + P +F + HR+FG N+ +++ R+DA+ S+
Sbjct: 41 CAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSV 100
Query: 99 AYEADMRLRDPVYGCVAII 117
YE+D + DP+ G I+
Sbjct: 101 VYESDAWVIDPLGGAAGIV 119
>Os08g0517100 Similar to ASYMMETRIC LEAVES2 protein (LOB domain protein 36)
Length = 95
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%)
Query: 39 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLL 83
CAAC++LRR+C DCV AP+FP P ++ VHRVFGASNV +LL
Sbjct: 48 CAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,394,110
Number of extensions: 197280
Number of successful extensions: 375
Number of sequences better than 1.0e-10: 23
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 24
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)