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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0149000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LOB domain protein 31.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0174) R2 : 3.18e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00139 (0.0366) R2dN8 : 4.1e-06 R2N8 : 3.18e-06
σ : 0.328
deviance : 49.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.26 0.32 3.06 0.0218 0.148 0.524 -0.117 1.74 0.00173 10.3 8.7 7 -- --
47.61 0.321 3.06 0.0227 0.154 0.172 -0.0162 -- -0.00489 10.1 9.005 6 -- --
46.31 0.317 3.06 0.0174 0.149 0.512 -- 1.68 0.00161 10.4 8.672 6 -- --
47.57 0.321 3.05 0.0211 0.155 0.182 -- -- 0.00516 10.4 9.01 5 -- --
47.66 0.322 3.07 0.0169 -- 0.554 -- 1.77 0.00187 -- 8.66 6 -- --
47.73 0.324 3.06 0.0076 0.159 -- -0.0244 -- -0.000224 10.5 -- -- -- --
47.73 0.324 3.06 0.00664 0.159 -- -- -- -0.000277 10.5 -- -- -- --
48.37 0.324 3.06 0.0212 -- 0.363 -- -- 0.00869 -- 9.5 5 -- --
47.58 0.321 3.06 -- 0.155 0.173 -- -- 0.00267 10.4 9.023 5 -- --
49.28 0.328 3.06 0.00381 -- -- -- -- -0.000972 -- -- -- -- --
47.73 0.323 3.06 -- 0.159 -- -- -- -0.00102 10.5 -- -- -- --
48.39 0.324 3.06 -- -- 0.361 -- -- 0.00567 -- 9.5 5 -- --
49.28 0.328 3.06 -- -- -- -- -- -0.00139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.88 wind 1.0 30 < th dose independent rect. 10 1
2 39.88 temperature 10.0 1440 > th dose independent rect. 11 1
6 39.88 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 39.88 precipitation 0.1 1440 < th dose independent rect. 11 1
10 39.88 temperature 10.0 1440 > th dose independent rect. 12 23
13 39.88 wind 1.0 30 < th dose dependent rect. 10 1
14 39.88 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 40.15 temperature 25.0 30 > th dose dependent rect. 10 1
16 40.16 humidity 70.0 30 < th dose independent rect. 10 1
18 40.37 temperature 25.0 30 > th dose independent rect. 10 1
19 40.38 atmosphere 1010.0 30 < th dose independent rect. 10 1
21 40.43 humidity 80.0 30 < th dose dependent rect. 10 1
22 40.48 atmosphere 1005.0 30 > th dose independent rect. 10 1
23 40.48 radiation 40.0 30 < th dose independent rect. 10 1
25 40.51 radiation 20.0 30 > th dose independent rect. 10 1
28 40.53 atmosphere 1000.0 30 > th dose dependent rect. 10 1
35 40.67 temperature 30.0 30 < th dose independent rect. 10 1
37 40.69 wind 5.0 30 < th dose dependent rect. 10 1
40 40.71 humidity 60.0 30 > th dose independent rect. 10 1
41 40.72 wind 5.0 30 < th dose independent rect. 10 1
44 40.73 temperature 10.0 30 > th dose independent rect. 10 1
51 40.73 precipitation 0.1 30 < th dose independent rect. 10 1
52 40.73 temperature 10.0 30 > th dose independent rect. 11 23
53 40.73 precipitation 0.1 30 < th dose dependent rect. 10 1
55 40.77 wind 1.0 30 > th dose independent rect. 10 1
57 40.90 radiation 1.0 30 > th dose dependent rect. 10 1
59 41.03 radiation 40.0 30 < th dose dependent rect. 10 1
62 41.36 atmosphere 1015.0 30 < th dose dependent rect. 10 1
63 41.44 humidity 50.0 30 > th dose dependent rect. 10 1
64 41.48 wind 1.0 30 > th dose dependent rect. 10 1
93 42.99 wind 9.0 30 < th dose independent rect. 11 23
116 44.21 precipitation 0.1 30 < th dose independent rect. 11 23
117 44.21 precipitation 0.1 30 < th dose dependent rect. 11 23
119 44.36 atmosphere 1000.0 30 > th dose independent rect. 11 23
127 44.81 humidity 50.0 10 > th dose independent rect. 11 23
133 45.16 wind 9.0 4320 > th dose dependent rect. 13 2
137 45.41 wind 9.0 4320 > th dose independent rect. 13 1
139 45.53 wind 9.0 4320 < th dose independent rect. 13 1
140 45.54 temperature 30.0 30 < th dose independent rect. 11 23
142 45.56 wind 9.0 90 > th dose dependent rect. 10 1
145 45.60 wind 5.0 90 > th dose dependent rect. 10 1
157 45.66 wind 7.0 90 > th dose independent rect. 10 1
173 45.71 humidity 70.0 4320 > th dose independent rect. 21 1
175 45.72 atmosphere 1010.0 10 < th dose independent rect. 11 9
184 45.76 temperature 25.0 90 > th dose dependent rect. 19 16
225 45.93 wind 5.0 720 > th dose independent rect. 4 1
228 45.93 wind 5.0 720 > th dose dependent rect. 4 1
230 45.93 humidity 80.0 4320 < th dose dependent rect. 23 1
262 45.97 wind 7.0 10 > th dose independent rect. 11 1
263 45.97 precipitation 0.1 1440 < th dose independent rect. 15 1
269 45.97 precipitation 0.1 1440 < th dose dependent rect. 15 1
294 46.00 wind 5.0 10 > th dose dependent rect. 11 1
295 46.00 atmosphere 1010.0 10 > th dose dependent rect. 12 1
332 46.01 wind 1.0 30 < th dose independent rect. 10 4
358 46.02 humidity 80.0 4320 < th dose independent rect. 23 1
374 46.03 humidity 70.0 4320 > th dose independent rect. 21 7
440 46.06 humidity 90.0 1440 > th dose dependent rect. 15 1
445 46.07 precipitation 0.1 1440 > th dose independent rect. 15 1
447 46.07 precipitation 0.1 1440 > th dose dependent rect. 15 1
454 46.08 humidity 80.0 4320 < th dose dependent rect. 22 9
460 46.09 humidity 80.0 4320 > th dose independent rect. 23 8
505 46.12 atmosphere 1010.0 10 > th dose dependent sin 23 NA
514 46.13 wind 7.0 90 < th dose independent sin 5 NA
516 46.13 humidity 80.0 4320 < th dose independent rect. 23 8
533 46.14 humidity 80.0 4320 > th dose independent rect. 2 3
659 46.16 humidity 80.0 4320 < th dose independent rect. 23 4
664 46.16 humidity 90.0 4320 < th dose dependent rect. 3 1
822 46.18 temperature 25.0 90 > th dose dependent rect. 2 9
922 46.20 radiation 1.0 30 > th dose independent rect. 11 23
924 46.20 humidity 90.0 4320 < th dose dependent rect. 2 3
951 46.22 wind 7.0 90 > th dose independent sin 5 NA
955 46.22 humidity 80.0 4320 < th dose independent rect. 2 5
985 46.23 atmosphere 1010.0 270 < th dose independent rect. 2 15
987 46.23 wind 7.0 90 > th dose dependent sin 5 NA
989 46.23 wind 1.0 90 < th dose dependent rect. 13 1
997 46.24 humidity 80.0 4320 < th dose independent rect. 2 2
999 46.24 humidity 70.0 4320 > th dose independent rect. 21 3