Os05g0123000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0123000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.02 | 0.364 | 9.58 | 0.952 | 0.0164 | -1.77 | -0.937 | 1.85 | 0.0742 | 19.2 | 16.48 | 704 | -- | -- |
| 62 | 0.367 | 9.62 | 0.62 | 0.19 | -1.94 | -0.285 | -- | -0.017 | 16 | 14.8 | 590 | -- | -- |
| 61.21 | 0.364 | 9.6 | 0.811 | 0.21 | -1.83 | -- | 1.15 | 0.0273 | 15.2 | 16.15 | 573 | -- | -- |
| 62.13 | 0.367 | 9.62 | 0.612 | 0.208 | -1.93 | -- | -- | -0.0178 | 15.1 | 14.8 | 573 | -- | -- |
| 61.97 | 0.367 | 9.6 | 0.838 | -- | -1.79 | -- | 1.15 | 0.036 | -- | 16.1 | 704 | -- | -- |
| 105.71 | 0.482 | 9.68 | 0.131 | 0.456 | -- | 0.61 | -- | -0.313 | 8.62 | -- | -- | -- | -- |
| 106.87 | 0.484 | 9.68 | 0.152 | 0.452 | -- | -- | -- | -0.312 | 8.87 | -- | -- | -- | -- |
| 62.96 | 0.37 | 9.62 | 0.619 | -- | -1.87 | -- | -- | -0.0252 | -- | 14.8 | 694 | -- | -- |
| 70.8 | 0.392 | 9.64 | -- | 0.231 | -1.68 | -- | -- | -0.128 | 13.7 | 14.68 | 514 | -- | -- |
| 118.55 | 0.509 | 9.69 | 0.152 | -- | -- | -- | -- | -0.308 | -- | -- | -- | -- | -- |
| 107.48 | 0.485 | 9.68 | -- | 0.453 | -- | -- | -- | -0.329 | 8.84 | -- | -- | -- | -- |
| 71.92 | 0.395 | 9.65 | -- | -- | -1.55 | -- | -- | -0.122 | -- | 16.18 | 661 | -- | -- |
| 119.15 | 0.51 | 9.69 | -- | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 57.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 40 | 57.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 71 | 58.15 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 73 | 58.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 76 | 58.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 99 | 58.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 118 | 58.39 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 139 | 58.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 154 | 58.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 158 | 58.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 183 | 58.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 196 | 58.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 7 |
| 218 | 58.73 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 432 | 59.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 438 | 59.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 578 | 59.65 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 634 | 59.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 715 | 59.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 753 | 60.10 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 792 | 60.21 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 853 | 60.37 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 868 | 60.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 892 | 60.46 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 950 | 60.63 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 953 | 60.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 961 | 60.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |