BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0123000 Os05g0123000|Os05g0123000
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0123000                                                      176   6e-45
Os03g0287400  Similar to LOB domain protein 4                      89   1e-18
Os05g0346800  Similar to LOB domain protein 3                      74   5e-14
Os01g0825000  Similar to LOB domain protein 12                     65   1e-11
Os02g0713100                                                       64   4e-11
Os12g0106200  Similar to LOB domain protein 4                      64   5e-11
Os11g0106900  Lateral organ boundaries, LOB domain containin...    64   5e-11

>Os05g0123000 
          Length = 145

 Score =  176 bits (445), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 93/145 (64%)

Query: 1   MASSPLMSPSWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKXXX 60
           MASSPLMSPSWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLK   
Sbjct: 1   MASSPLMSPSWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQL 60

Query: 61  XXXXXXXXXXXXXXXHLVALLCMEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 120
                          HLVALLCMEM                                  L
Sbjct: 61  ARAHAELAGARAQHAHLVALLCMEMAAAAPPQHPTTTAAAAAYCAAVGGAASPAAPVDAL 120

Query: 121 YVVDGAGAAAMQASPIGWVDEPLWT 145
           YVVDGAGAAAMQASPIGWVDEPLWT
Sbjct: 121 YVVDGAGAAAMQASPIGWVDEPLWT 145



>Os03g0287400 Similar to LOB domain protein 4
          Length = 239

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 52/74 (70%)

Query: 12  LQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKXXXXXXXXXXXXXX 71
           LQELPE  RADAVSSMVYEA AR+RDPVYGCAGA+C+LQK+ N+LK              
Sbjct: 108 LQELPESARADAVSSMVYEAEARLRDPVYGCAGAVCRLQKEANELKVQLARAQADLLNAR 167

Query: 72  XXXXHLVALLCMEM 85
               +LVAL+C+E+
Sbjct: 168 AQHDNLVALVCVEL 181



>Os05g0346800 Similar to LOB domain protein 3
          Length = 200

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 39/46 (84%)

Query: 12 LQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLK 57
          LQELP +QR DAVSS+VYEANAR+RDPVYGC GAI  LQ QV+ L+
Sbjct: 51 LQELPAQQRGDAVSSLVYEANARMRDPVYGCVGAISFLQNQVSQLQ 96



>Os01g0825000 Similar to LOB domain protein 12
          Length = 251

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 12  LQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLK 57
           L E+ E +RADA SS+VYEAN R+RDPVYGC GAI  LQ+QVN L+
Sbjct: 104 LLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALE 149



>Os02g0713100 
          Length = 95

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 38/52 (73%)

Query: 6  LMSPSWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLK 57
          L   S LQEL   Q+ DAVSS+VYEAN R+RDPVYGC GAI  +Q QV+ L+
Sbjct: 2  LARCSSLQELLARQQGDAVSSLVYEANDRMRDPVYGCVGAISFMQNQVSQLQ 53



>Os12g0106200 Similar to LOB domain protein 4
          Length = 156

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 12 LQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLK 57
          L ++P  QR DAVSS+VYEANAR+RDPVYGC  AI  LQ QV+ L+
Sbjct: 54 LLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99



>Os11g0106900 Lateral organ boundaries, LOB domain containing protein
          Length = 156

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 12 LQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLK 57
          L ++P  QR DAVSS+VYEANAR+RDPVYGC  AI  LQ QV+ L+
Sbjct: 54 LLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,180,140
Number of extensions: 71725
Number of successful extensions: 251
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 7
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)