BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0409400 Os10g0409400|AK120091
(344 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0409400 Similar to Polygalacturonase isoenzyme 1 beta ... 577 e-165
Os08g0380100 Similar to Polygalacturonase isoenzyme 1 beta ... 273 1e-73
Os09g0329000 BURP domain containing protein 262 3e-70
Os04g0225700 BURP domain containing protein 123 2e-28
Os08g0496800 Similar to RAFTIN1a protein (RAFTIN1a anther p... 122 3e-28
Os01g0733500 Similar to Dehydration-induced protein RD22-li... 119 5e-27
Os11g0170900 BURP domain containing protein 118 6e-27
Os06g0240300 111 7e-25
Os06g0302000 BURP domain containing protein 105 3e-23
Os06g0281800 BURP domain containing protein 105 7e-23
Os05g0215066 BURP domain containing protein 88 7e-18
Os02g0288600 BURP domain containing protein 82 8e-16
Os05g0217800 Virulence factor, pectin lyase fold family pro... 65 5e-11
>Os10g0409400 Similar to Polygalacturonase isoenzyme 1 beta subunit precursor
Length = 344
Score = 577 bits (1488), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/321 (88%), Positives = 283/321 (88%)
Query: 24 HASSVDPLSAGATTVRYWNRKIPNNAPHPDFFXXXXXXXXXXXXXXXXXXXXXXXXICRS 83
HASSVDPLSAGATTVRYWNRKIPNNAPHPDFF ICRS
Sbjct: 24 HASSVDPLSAGATTVRYWNRKIPNNAPHPDFFLSLLSPLPASVSSSLSSPLSISPSICRS 83
Query: 84 ARLLCPNSTYFQSLSSTVFIDGCTFSYSCTFTYEHTNITIKPGIFFREQELKEGNVVRMP 143
ARLLCPNSTYFQSLSSTVFIDGCTFSYSCTFTYEHTNITIKPGIFFREQELKEGNVVRMP
Sbjct: 84 ARLLCPNSTYFQSLSSTVFIDGCTFSYSCTFTYEHTNITIKPGIFFREQELKEGNVVRMP 143
Query: 144 DIANELTTARSSFLPRSIADRIPFKAEAVKSLFGLEPNTTLAKAVDETVAQCQSSPSKGE 203
DIANELTTARSSFLPRSIADRIPFKAEAVKSLFGLEPNTTLAKAVDETVAQCQSSPSKGE
Sbjct: 144 DIANELTTARSSFLPRSIADRIPFKAEAVKSLFGLEPNTTLAKAVDETVAQCQSSPSKGE 203
Query: 204 TKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESXXXXXXXXXXXXXXTSSVSCHEY 263
TKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGES TSSVSCHEY
Sbjct: 204 TKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESIMIGKVKGINGGKITSSVSCHEY 263
Query: 264 LFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICHIDTSAWNAGHPAFVALGGKPG 323
LFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICHIDTSAWNAGHPAFVALGGKPG
Sbjct: 264 LFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICHIDTSAWNAGHPAFVALGGKPG 323
Query: 324 QNKVCHWIFNGSMTWVIADKS 344
QNKVCHWIFNGSMTWVIADKS
Sbjct: 324 QNKVCHWIFNGSMTWVIADKS 344
>Os08g0380100 Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment)
Length = 627
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 161/227 (70%), Gaps = 2/227 (0%)
Query: 116 YEHTNITIKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSL 175
++H + +PG FFRE EL GN + MPDI +++ +FLPR IA +IPFK AV +
Sbjct: 403 HQHLKWSPEPGKFFRETELVSGNTMPMPDIKDKMPP--RAFLPRDIAKKIPFKPNAVSEV 460
Query: 176 FGLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPN 235
FG+ +T + KAV TVA+C+ +PS+GETKRC TSAED++DFAV MLG+DIVVRST
Sbjct: 461 FGVPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTA 520
Query: 236 GPGESXXXXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKIN 295
G G T SVSCH+ LFPY+VYYCHSVPK+RVYEA+I++ + +KIN
Sbjct: 521 GSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKIN 580
Query: 296 SGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIAD 342
GVAICH+DTS W+ H AF+ALGGKPG+ +VCHWIF G MTW +AD
Sbjct: 581 HGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTWTVAD 627
>Os09g0329000 BURP domain containing protein
Length = 690
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 123/220 (55%), Positives = 155/220 (70%), Gaps = 3/220 (1%)
Query: 124 KPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSLFGLEPNTT 183
+PG FFRE++L GN + MPDIA+ T +FLPR IA +IPF A AV +LFG P T
Sbjct: 473 EPGKFFRERDLVAGNRMPMPDIADR--TPPRAFLPRDIAAKIPFDAAAVSALFGAAPGTA 530
Query: 184 LAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRST-VLPNGPGESXX 242
+ + V TVA+C PS+GETKRC TSAED++DFAV MLGD++V R+T G G+
Sbjct: 531 MRQVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVARATESTAGGGGDVRL 590
Query: 243 XXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICH 302
T SVSCH+ LFPY+VYYCHSVP +RVYEA+IL+V + +KIN GVAICH
Sbjct: 591 GRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYEADILAVDSNQKINHGVAICH 650
Query: 303 IDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIAD 342
+DTS W+ H AF+ALGGKPG+ +VCHWIF G MTW +A+
Sbjct: 651 LDTSDWSPNHGAFIALGGKPGEMEVCHWIFQGDMTWTVAN 690
>Os04g0225700 BURP domain containing protein
Length = 330
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 126 GIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSL---FGLEPNT 182
G+FF E L+ +++ AN + A + FLPR AD +PF ++ ++ + FG+ P +
Sbjct: 113 GLFFLETNLQSSKSIKL-HFANMM--AGTKFLPRGEADAVPFSSKDLQEILARFGVRPGS 169
Query: 183 TLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLG-DDIVVRSTVLPNGPGESX 241
A V T+ +C+ +KGE K C TS E M+DF + LG DI ST L G++
Sbjct: 170 VDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTRDIKAASTFLVGKDGDTP 229
Query: 242 XXXXXXXXXXXXXTSS--VSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVA 299
+ ++CH +PY V+ CH R Y+A + V VA
Sbjct: 230 AQEYTVTGARRMAETGQLIACHPESYPYAVFMCHLTEATRAYKASL--VGKDGAAVEAVA 287
Query: 300 ICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTW 338
+CH DT+ WN H AF LG KPG VCH++ + W
Sbjct: 288 VCHTDTAEWNPKHAAFQVLGVKPGTVPVCHFVQPDVVVW 326
>Os08g0496800 Similar to RAFTIN1a protein (RAFTIN1a anther protein)
Length = 412
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 110/224 (49%), Gaps = 9/224 (4%)
Query: 127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPF---KAEAVKSLFGLEPNTT 183
+FF E+ ++ G R+P TT+ FLPR +AD IPF AV +LFG+ P+T
Sbjct: 189 VFFHEEAVRVGE--RLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTA 246
Query: 184 LAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGD-DIVVRSTVLPNGPGESXX 242
A + ET+ C+ GE+K C TS E +++ A+A LG DI ++ LP G G
Sbjct: 247 EAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRG-GAPLQ 305
Query: 243 XXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRVY--EAEILSVQTKEKINSGVAI 300
V+CH+ +PY VY CH+ R Y E E + + +
Sbjct: 306 AYAVRAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYMVEMEGDGGGDGGEAVTVATV 365
Query: 301 CHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIADKS 344
CH +TS WN H +F LG KPG + VCH + G + W KS
Sbjct: 366 CHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWAKNVKS 409
>Os01g0733500 Similar to Dehydration-induced protein RD22-like protein 1
Length = 429
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 108 FSYSCTFTYEHTNITIKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPF 167
++Y+ T T H + + +FF E++L G + + A TTA FLPRS AD +PF
Sbjct: 195 YNYAATETQLHDDPNV--ALFFLEKDLHPGKTMAVHFTA---TTAGEKFLPRSEADAMPF 249
Query: 168 KAEAVK---SLFGLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGD 224
+E V S F ++P + A + +T+ C++ P++GE K C TS E M+DFA + LG
Sbjct: 250 SSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGT 309
Query: 225 DIVVRSTVLPNGPG----ESXXXXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRV 280
V ++ + G E V+CH + Y V+ CH R
Sbjct: 310 SHVRAASTVVGKEGSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRATRA 369
Query: 281 YEAEILSVQTKEKIN-SGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTW 338
Y +S+ ++ VA+CH DT+ WN H AF L KPG VCH++ + W
Sbjct: 370 Y---AVSMAGRDGTGVEAVAVCHADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVW 425
>Os11g0170900 BURP domain containing protein
Length = 426
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 126 GIFFREQELKEGNVVRMP-DIANELTTARSSFLPRSIADRIPFKAEAVKSL---FGLEPN 181
+FF E+ L++G + AN L T S FLPR AD IPF ++ + + FG+ P
Sbjct: 202 ALFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPG 261
Query: 182 TTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLG-DDIVVRSTVLPNGPGES 240
+ A + T+ C+ +KGE K C TS E ++DF + G D+ STV+ + ES
Sbjct: 262 SDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGASDVDAASTVVLSKAVES 321
Query: 241 XXXXXXXXXXXXXXTSS----VSCHEYLFPYMVYYCH-SVPKIRVYEAEILSVQTKEKIN 295
+ ++CH +PY V+ CH + R Y+A + V
Sbjct: 322 SSLAQDYTVSGVRRMAGTGQLIACHPESYPYAVFMCHLTEATTRAYKASL--VGKDGTAV 379
Query: 296 SGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTW 338
VA+CH DTS WN H AF LG KPG VCH++ ++ W
Sbjct: 380 EAVAVCHTDTSDWNPEHAAFHVLGVKPGTVPVCHFMQPDAVVW 422
>Os06g0240300
Length = 361
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 14/221 (6%)
Query: 127 IFFREQELKEGNVVRMPDIANELTTARSS-FLPRSIADRIPFKAEAVKSLFGL--EPNTT 183
++F E L G+V+ I L+ +SS FL R+ + IPF + + + + + T
Sbjct: 125 LYFFEDNLAPGSVL----ITRILSARQSSIFLHRNNSKHIPFSMKNITDILTMFSPVSAT 180
Query: 184 LAKAVDETVAQCQSSPS-KGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGE--- 239
+A + T+ C+ + GE +C TS E ++D V+ LG +V + P P E
Sbjct: 181 MADGIAATLQACEHTGMVHGEKAKCATSIESLLDVVVSSLGTKLV--RALTPGAPMEGVP 238
Query: 240 SXXXXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGV- 298
S S ++CH+ L+PY V++CH+ + R+Y+ ++S ++ + G+
Sbjct: 239 SLRYIVASATPVPNSQSMLACHDMLYPYKVFFCHTPKQTRLYQVSLVSGESGRPLIDGLL 298
Query: 299 AICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339
A+CH +TS W+ GHP F + KPG+ CH+ GS+ WV
Sbjct: 299 AVCHQNTSDWDTGHPFFHFMDVKPGETTACHFFGRGSIIWV 339
>Os06g0302000 BURP domain containing protein
Length = 328
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSLFGLEPNTTLAK 186
+FF L+ G+V+ P I TT+ +FLPR +AD IPF A+ + + +LA
Sbjct: 73 VFFFRDALRPGSVI-TPTIPP--TTSLPAFLPRHVADAIPFSADRFADVLAMFAPASLAM 129
Query: 187 AVD-----ETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGD---------DIVVRSTV 232
A + +T Q ++ GE C TS E + D A ++LG D+ +
Sbjct: 130 AREIRWALDTCGQRAAALLPGEKAGCATSLESLADLAASLLGTRDVRAFSAADLPTDAAT 189
Query: 233 LPNGPGESXXXXXXXXXXXXXXTSS----------VSCHEYLFPYMVYYCHSVPKIRVYE 282
P G SS V+CH+ +PY V+YCHS Y
Sbjct: 190 TPARRGRYNVTSVRELSAMAGSGSSSSSEPAPAAVVACHDLTYPYAVFYCHSTKPTAAYA 249
Query: 283 AEILSVQTKEKINSG----------VAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIF 332
+++ T + G +A+CH+DTS W A +P FVA G KPG+ VCH++
Sbjct: 250 VTLVAATTGDGDGEGEAASPAKMEALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLT 309
Query: 333 NGSMTWV 339
S+ WV
Sbjct: 310 KLSIVWV 316
>Os06g0281800 BURP domain containing protein
Length = 350
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 119/253 (47%), Gaps = 25/253 (9%)
Query: 102 FIDGCTFSYSCTFT--YEHTNITIKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPR 159
+I+G + SYS ++ Y H K + F E LK G+++ P I T R+ FL R
Sbjct: 89 YINGYSHSYSNGYSNGYFH-----KANLHFLEDALKPGSII-TPYITGIAT--RAPFLRR 140
Query: 160 SIADRIPFKAEAVKSLFGLEPNTTL--AKAVDETVAQCQS-SPSKGETKRCVTSAEDMID 216
IAD IP + + + +L A + + C+ P KGE + C TS E +++
Sbjct: 141 DIADSIPVSTKNFADILAMFSPISLVMADGIQSALDTCEHHRPIKGEERACATSIESVVE 200
Query: 217 FAVAMLG--DDIVVRSTVLPNG--PGESXXXXXXXXXXXXXXTSSVSCHEYLFPYMVYYC 272
FA+++LG D V P G PG + +V+CH FP+ V+YC
Sbjct: 201 FAMSVLGTRDLRAFSPDVPPEGIMPG-NMYKVVAVRTVAGLRGDTVTCHTMRFPFAVFYC 259
Query: 273 HSVPKIRVYEAEILSVQTKEKINSG-------VAICHIDTSAWNAGHPAFVALGGKPGQN 325
H++ RVY + S + SG +A+CH+DTS ++ P FV +PG
Sbjct: 260 HAINPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDA 319
Query: 326 KVCHWIFNGSMTW 338
VCH++ S+ W
Sbjct: 320 SVCHFVSRDSVIW 332
>Os05g0215066 BURP domain containing protein
Length = 239
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 14/219 (6%)
Query: 127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEA---VKSLFGLEPNTT 183
+FF E++L G+ + + TA ++ LPR AD +PF +E + S + +
Sbjct: 27 VFFLEKDLFPGSKM---TLHFTRATAGAALLPRGRADSVPFASEKLPEILSQLSVPAGSP 83
Query: 184 LAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLG--DDIVVRSTVLPNGPGESX 241
A A+ T+A+C+++P GE KRC TS E M++FA + LG D V + V GP
Sbjct: 84 AADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTRDVHAVSTEVDRAGPTPRQ 143
Query: 242 XXXXXXXXXXXXXTSS-VSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAI 300
V+CH + Y V+ CH+ + TK + +A
Sbjct: 144 AYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCHTTTAAAYTVTLAGADGTKAE---ALAA 200
Query: 301 CHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339
CH D + A A+ LG PG VCH++ M WV
Sbjct: 201 CHTDAAPRVA--EAYKRLGVAPGSVPVCHFLPQDDMLWV 237
>Os02g0288600 BURP domain containing protein
Length = 347
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 28/247 (11%)
Query: 113 TFTYEHTNITIKPGIFFREQELK------EGNVVRMPDIANELTTARSSFLPRSIADRIP 166
+ + I I+ G+ F ++L EG + +P + + A F+ + D +P
Sbjct: 107 SLAHPAAGIHIQRGMLFLMKKLHPGAVLPEGTKLALPHGDHGVAAAAPRFIYKDKGDAVP 166
Query: 167 FK---AEAVKSLFGLEPNTTLAKAVDETVAQCQ---SSPSKGETKR--CVTSAEDMIDFA 218
F +A+ ++FG+ P + A V +T+ C ++ GE R C TS E ++DFA
Sbjct: 167 FDLRAMDAILAMFGILPGSDKAAQVADTLRACSELTAAGGGGEEPRACCATSREAVLDFA 226
Query: 219 VAMLGDDIVVRSTVLPNGPGESXXXXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKI 278
+ LG T L +G + V+CH + Y VYYCH
Sbjct: 227 ASALGTSAPRAVTTLVHGREPRRYVVAADGVARIGGDAVVACHPMPYLYEVYYCH----- 281
Query: 279 RVYEAEILSVQTKEKINSG------VAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIF 332
R +A L V + G VA+CH++T+ W++ + F L G + +CH++
Sbjct: 282 RPADAVALRVDLHAVADVGLGGATAVAVCHVNTTTWDSAY--FELLKASRG-DAICHYMP 338
Query: 333 NGSMTWV 339
G + W+
Sbjct: 339 QGYVLWL 345
>Os05g0217800 Virulence factor, pectin lyase fold family protein
Length = 287
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 19/226 (8%)
Query: 127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEA---VKSLFGLEPNTT 183
+FF E++L G+ + + TA ++ LPR AD +PF +E + S + +
Sbjct: 66 VFFLEKDLFPGSKM---TLHFTRATAGAALLPRGRADSVPFASEKLPEILSQLSIPAGSP 122
Query: 184 LAKAVDETVAQCQSSPSKGETK-----RCVTSAEDMIDFAVAMLGD-DIVVRSTVLPNGP 237
A A+ T+A C+++ ET C TS E M++ + LG D+ ST + N
Sbjct: 123 TADAMRSTLAVCEAARIASETAPKHKHYCATSLESMVELVASSLGTRDVHAVSTEVVNRA 182
Query: 238 GESXXXXXXXXXXXXXXTSS---VSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKI 294
G + V+CH + Y V+ H + K Y + +
Sbjct: 183 GPTPRQAYRVEAVRPVPVPGGDMVACHRMPYAYAVFGVHGI-KGAAYTVTLAGADGT--M 239
Query: 295 NSGVAICHIDTSAWN-AGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339
VA CH D A A+ LG PG+ VCH++ M WV
Sbjct: 240 AEAVAACHGDVDGHGVAVAEAYKRLGVAPGKVAVCHFLPQDDMLWV 285
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,515,533
Number of extensions: 326247
Number of successful extensions: 649
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 13
Length of query: 344
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 242
Effective length of database: 11,709,973
Effective search space: 2833813466
Effective search space used: 2833813466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)