Os05g0217800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0217800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.29	(0.0443)	R²	:	0.706
β₁	:	-1.07	(0.202)	R²_dD	:	0.0308	R²_D	:	0.142
β₂	:	1.72	(0.112)	R²_dC	:	0.152	R²_C	:	0.127
β₃	:	4.72	(0.255)	R²_dE	:	0.398	R²_E	:	0.526
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.281	(0.104)	R²_dN8	:	0.00812	R²_N8	:	0.0278
σ	:	0.801
deviance	:	296.1
__

_____

C
peak time of C	:	5.93
E
wheather	:	temperature
threshold	:	21.5
memory length	:	5382
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
295.03	0.807	5.17	-0.899	1.71	3.43	0.251	-3.35	-0.171	5.93	22.7	5362	--	--
296.29	0.802	5.28	-1.17	1.7	4.62	0.143	--	-0.306	5.98	21.5	5372	--	--
294.29	0.799	5.19	-0.945	1.7	3.6	--	-3	-0.217	5.91	22.18	5355	--	--
296.1	0.801	5.29	-1.07	1.72	4.72	--	--	-0.281	5.93	21.5	5382	--	--
442.33	0.98	5.24	-0.865	--	4.03	--	-2.19	-0.183	--	21.9	6318	--	--
517.62	1.07	5.49	-3.41	1.66	--	0.531	--	-1.18	6.14	--	--	--	--
518.32	1.07	5.49	-3.4	1.67	--	--	--	-1.18	6.16	--	--	--	--
443.57	0.981	5.31	-0.911	--	4.94	--	--	-0.231	--	21.37	6315	--	--
313.96	0.825	5.24	--	1.71	5.58	--	--	-0.0499	5.95	21.51	5456	--	--
662.09	1.2	5.52	-3.36	--	--	--	--	-1.15	--	--	--	--	--
823.71	1.34	5.4	--	1.62	--	--	--	-0.803	6.27	--	--	--	--
456.25	0.995	5.27	--	--	5.7	--	--	-0.0249	--	21.36	6344	--	--
959.44	1.45	5.43	--	--	--	--	--	-0.773	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	289.98	wind	1	43200	< th	dose dependent	rect.	11	1
2	290.56	wind	1	43200	> th	dose dependent	rect.	1	1
4	293.26	temperature	25	4320	< th	dose dependent	rect.	17	2
5	293.55	temperature	20	4320	< th	dose independent	rect.	16	7
6	293.63	temperature	20	14400	< th	dose independent	rect.	19	1
8	293.97	temperature	25	4320	< th	dose dependent	rect.	15	8
13	294.33	temperature	25	4320	< th	dose dependent	rect.	16	5
19	294.48	humidity	80	43200	> th	dose independent	rect.	2	1
25	294.68	humidity	90	43200	> th	dose dependent	rect.	12	2
31	295.20	humidity	90	43200	> th	dose independent	rect.	12	2
36	295.55	wind	3	43200	< th	dose dependent	rect.	8	4
42	295.81	temperature	20	4320	> th	dose independent	rect.	14	10
43	295.85	temperature	20	4320	< th	dose dependent	rect.	20	5
45	295.90	wind	3	43200	< th	dose dependent	rect.	19	6
49	296.00	temperature	20	4320	> th	dose independent	rect.	16	7
56	296.33	wind	3	43200	> th	dose independent	rect.	18	4
59	296.37	temperature	20	4320	< th	dose dependent	rect.	19	7
60	296.38	wind	1	14400	> th	dose independent	rect.	24	1
91	297.63	wind	3	43200	< th	dose independent	rect.	18	4
99	297.74	wind	7	43200	> th	dose independent	rect.	22	2
100	297.75	wind	7	43200	< th	dose independent	rect.	22	2
101	297.80	humidity	80	43200	> th	dose independent	rect.	2	7
105	297.91	wind	1	14400	> th	dose independent	rect.	23	3
106	298.00	temperature	25	4320	< th	dose dependent	sin	17	NA
117	298.26	radiation	1	14400	> th	dose independent	rect.	8	9
123	298.43	radiation	1	14400	< th	dose independent	rect.	8	9
124	298.46	wind	3	43200	> th	dose independent	rect.	16	7
125	298.46	wind	3	43200	> th	dose independent	rect.	9	15
126	298.48	wind	3	43200	> th	dose independent	rect.	19	2
127	298.53	wind	3	43200	< th	dose independent	rect.	9	15
131	298.65	wind	3	43200	> th	dose independent	rect.	11	13
140	298.81	wind	7	43200	> th	dose dependent	rect.	22	1
142	298.84	temperature	20	14400	> th	dose independent	rect.	19	1
145	298.85	wind	3	43200	> th	dose independent	rect.	13	11
148	298.88	wind	9	43200	> th	dose independent	rect.	1	2
156	299.00	wind	5	43200	< th	dose dependent	rect.	14	10
167	299.19	temperature	20	4320	< th	dose dependent	rect.	23	1
181	299.35	temperature	20	4320	< th	dose independent	sin	17	NA
184	299.36	wind	3	43200	< th	dose independent	rect.	11	13
186	299.37	humidity	80	43200	< th	dose independent	rect.	2	2
189	299.42	radiation	1	43200	< th	dose independent	rect.	14	1
190	299.42	radiation	1	43200	< th	dose dependent	rect.	14	1
196	299.52	radiation	1	43200	> th	dose independent	rect.	14	1
215	299.78	radiation	1	14400	< th	dose dependent	rect.	6	11
230	300.12	radiation	1	14400	> th	dose independent	rect.	6	23
234	300.14	wind	9	43200	> th	dose dependent	rect.	1	2
245	300.29	wind	3	43200	< th	dose independent	rect.	16	7
248	300.32	radiation	1	14400	> th	dose independent	rect.	6	13
263	300.37	wind	3	43200	> th	dose independent	sin	19	NA
277	300.51	humidity	80	43200	< th	dose independent	rect.	2	5
289	300.52	temperature	20	4320	> th	dose independent	sin	18	NA
316	300.84	radiation	1	14400	> th	dose independent	rect.	18	23
332	301.00	wind	3	43200	> th	dose independent	rect.	6	16
345	301.19	humidity	80	43200	> th	dose independent	rect.	19	11
346	301.19	wind	1	43200	< th	dose dependent	rect.	8	18
355	301.27	wind	3	43200	< th	dose independent	sin	19	NA
356	301.27	wind	3	43200	< th	dose dependent	rect.	8	16
359	301.29	wind	3	43200	< th	dose independent	rect.	19	2
364	301.30	wind	3	43200	< th	dose independent	rect.	6	16
385	301.40	radiation	1	43200	< th	dose dependent	rect.	11	5
405	301.52	radiation	1	14400	< th	dose independent	rect.	6	23
423	301.73	radiation	1	14400	< th	dose independent	rect.	6	18
426	301.75	radiation	1	14400	< th	dose independent	rect.	6	13
433	301.78	radiation	1	14400	< th	dose independent	rect.	18	23
440	301.84	radiation	1	43200	< th	dose independent	rect.	11	1
441	301.84	radiation	1	43200	< th	dose dependent	rect.	11	1
459	301.97	radiation	1	43200	> th	dose independent	rect.	11	1
478	302.10	wind	9	43200	< th	dose independent	rect.	21	6
479	302.10	wind	5	43200	< th	dose dependent	sin	17	NA
505	302.21	radiation	1	14400	< th	dose dependent	rect.	21	20
518	302.26	wind	9	43200	> th	dose independent	rect.	21	6
523	302.28	humidity	80	14400	< th	dose independent	rect.	11	2
525	302.30	humidity	80	43200	< th	dose independent	rect.	19	11
529	302.36	humidity	80	43200	< th	dose independent	rect.	1	8
533	302.39	humidity	80	43200	> th	dose independent	rect.	19	14
556	302.47	wind	1	14400	< th	dose independent	rect.	22	4
570	302.54	radiation	1	14400	> th	dose independent	sin	23	NA
606	302.81	temperature	15	43200	< th	dose independent	rect.	21	1
615	302.85	temperature	15	43200	> th	dose independent	rect.	11	1
618	302.87	wind	1	14400	< th	dose independent	rect.	24	1
619	302.87	temperature	15	43200	> th	dose independent	rect.	21	1
662	303.16	temperature	15	43200	< th	dose independent	rect.	11	1
688	303.29	radiation	1	14400	< th	dose independent	sin	0	NA
690	303.30	radiation	1	14400	< th	dose independent	rect.	9	4
693	303.30	wind	9	43200	< th	dose dependent	rect.	1	1
698	303.32	radiation	1	14400	< th	dose dependent	rect.	6	17
706	303.35	radiation	1	14400	> th	dose independent	rect.	9	4
707	303.35	radiation	1	43200	< th	dose independent	rect.	11	4
714	303.36	temperature	15	43200	< th	dose dependent	rect.	22	2
770	303.53	radiation	1	14400	> th	dose independent	rect.	14	22
777	303.55	radiation	1	14400	< th	dose dependent	sin	0	NA
784	303.60	radiation	1	43200	> th	dose independent	rect.	11	4
808	303.71	wind	3	14400	< th	dose independent	rect.	11	1
809	303.71	wind	3	43200	< th	dose independent	rect.	8	9
813	303.73	humidity	80	43200	< th	dose independent	rect.	23	11
838	303.84	radiation	1	14400	> th	dose independent	rect.	18	11
846	303.89	humidity	90	43200	< th	dose dependent	rect.	1	9
872	303.99	humidity	70	43200	< th	dose dependent	rect.	24	10
879	304.01	wind	3	43200	< th	dose dependent	rect.	23	1
936	304.28	wind	7	43200	> th	dose dependent	rect.	22	4
961	304.37	humidity	80	43200	< th	dose independent	rect.	19	14
967	304.39	wind	7	43200	< th	dose independent	rect.	1	1
970	304.40	radiation	1	14400	< th	dose independent	rect.	21	20
971	304.41	radiation	1	14400	> th	dose independent	no	NA	NA