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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0302000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BURP domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0261) R2 : 0.000139
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0138 (0.055) R2dN8 : 0.000179 R2N8 : 0.000139
σ : 0.492
deviance : 111.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.91 0.481 2.86 0.102 0.307 0.243 -2.25 -2.01 0.0243 10.9 0.1196 121 -- --
108.37 0.489 2.88 -0.0491 0.0872 0.00696 -0.973 -- -0.0251 6 0.1196 121 -- --
108.89 0.486 2.85 0.0259 0.295 0.247 -- -0.278 0.041 11.3 0.1737 135 -- --
109.06 0.486 2.86 0.00025 0.302 0.264 -- -- 0.031 12 0.1774 148 -- --
106.76 0.481 2.86 0.0311 -- 0.15 -- -1.65 0.0236 -- 14.88 666 -- --
108.38 0.488 2.88 -0.0498 0.0855 -- -0.972 -- -0.0256 5.96 -- -- -- --
110.61 0.493 2.88 -0.0569 0.088 -- -- -- -0.0214 7.56 -- -- -- --
110.42 0.489 2.88 -0.0303 -- 0.128 -- -- -0.0019 -- 22.3 768 -- --
108.93 0.486 2.87 -- 0.329 0.266 -- -- 0.0164 11.9 0.19 132 -- --
111.03 0.492 2.88 -0.0556 -- -- -- -- -0.02 -- -- -- -- --
110.7 0.492 2.88 -- 0.0875 -- -- -- -0.015 7.6 -- -- -- --
110.17 0.489 2.88 -- -- 0.127 -- -- -0.0284 -- 0.19 1041 -- --
111.11 0.492 2.88 -- -- -- -- -- -0.0138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.44 temperature 20.0 30 < th dose independent rect. 7 1
4 92.44 temperature 20.0 30 < th dose dependent rect. 7 1
13 94.22 radiation 1.0 30 < th dose dependent rect. 7 1
36 98.25 humidity 90.0 30 > th dose dependent rect. 7 1
38 98.27 humidity 90.0 30 > th dose dependent rect. 7 3
50 98.86 wind 1.0 30 < th dose independent rect. 17 1
61 98.86 wind 1.0 30 < th dose dependent rect. 17 1
72 98.97 radiation 1.0 90 < th dose independent rect. 6 1
107 99.51 humidity 70.0 30 < th dose independent rect. 17 3
121 99.52 humidity 70.0 90 < th dose independent rect. 17 1
138 99.65 humidity 70.0 90 < th dose dependent rect. 17 3
199 100.90 humidity 90.0 30 > th dose dependent rect. 7 11
241 101.51 atmosphere 1000.0 30 < th dose dependent rect. 15 7
245 101.53 atmosphere 1000.0 30 < th dose dependent rect. 15 5
247 101.54 atmosphere 1000.0 30 < th dose dependent rect. 15 3
255 101.56 atmosphere 1000.0 30 < th dose dependent rect. 15 1
273 101.62 atmosphere 1000.0 10 < th dose independent rect. 15 1
288 101.66 humidity 90.0 10 > th dose independent rect. 7 1
317 101.74 atmosphere 1005.0 10 < th dose independent rect. 7 1
529 103.22 atmosphere 1000.0 270 < th dose independent rect. 12 5
545 103.42 atmosphere 1000.0 270 < th dose dependent rect. 12 5
548 103.44 atmosphere 1000.0 270 < th dose dependent rect. 12 7
599 103.81 humidity 50.0 270 < th dose independent rect. 14 21
614 103.88 humidity 50.0 270 < th dose dependent rect. 14 22
626 103.95 humidity 90.0 90 > th dose dependent rect. 6 17
639 104.04 wind 7.0 1440 > th dose dependent rect. 20 14
642 104.07 humidity 50.0 270 < th dose dependent sin 11 NA
644 104.07 wind 7.0 1440 > th dose dependent rect. 20 9
648 104.08 wind 7.0 1440 > th dose dependent rect. 20 7
651 104.09 wind 7.0 1440 > th dose dependent rect. 20 5
658 104.11 humidity 50.0 270 < th dose dependent rect. 14 2
678 104.12 wind 7.0 1440 > th dose independent rect. 20 12
679 104.13 humidity 50.0 270 < th dose independent rect. 14 3
686 104.13 wind 7.0 1440 > th dose independent rect. 20 9
702 104.15 wind 7.0 1440 > th dose independent rect. 20 6
704 104.15 radiation 1.0 90 < th dose dependent rect. 6 23
708 104.19 wind 7.0 1440 < th dose independent rect. 20 7
711 104.21 temperature 20.0 1440 > th dose independent rect. 9 3
712 104.21 wind 7.0 1440 < th dose independent rect. 20 5
713 104.21 wind 7.0 1440 > th dose dependent rect. 20 2
720 104.22 radiation 1.0 90 < th dose dependent rect. 6 11
730 104.25 wind 7.0 1440 > th dose independent rect. 20 2
731 104.25 wind 7.0 1440 < th dose independent rect. 20 12
732 104.26 wind 9.0 1440 < th dose independent rect. 19 15
743 104.31 humidity 50.0 270 < th dose independent sin 11 NA
745 104.31 atmosphere 1000.0 720 < th dose dependent rect. 8 6
749 104.34 wind 7.0 1440 < th dose independent rect. 20 2
751 104.34 humidity 90.0 30 < th dose independent rect. 1 10
788 104.40 wind 9.0 1440 > th dose independent rect. 19 15
789 104.40 radiation 1.0 90 < th dose independent rect. 6 23
798 104.42 humidity 50.0 270 > th dose independent sin 12 NA
799 104.42 temperature 20.0 1440 < th dose independent rect. 9 1
805 104.42 atmosphere 1010.0 10 < th dose dependent rect. 7 1
809 104.43 atmosphere 1010.0 90 < th dose dependent rect. 7 1
826 104.47 atmosphere 1000.0 720 < th dose independent rect. 8 5
842 104.50 atmosphere 1000.0 720 < th dose dependent rect. 9 2
907 104.52 atmosphere 1000.0 720 < th dose independent rect. 8 3
927 104.53 precipitation 0.1 1440 > th dose independent rect. 20 2
929 104.53 precipitation 0.1 1440 > th dose dependent rect. 20 2
944 104.57 radiation 1.0 90 > th dose independent rect. 8 23
946 104.58 humidity 90.0 10 < th dose independent rect. 5 6
996 104.69 temperature 20.0 90 > th dose independent rect. 5 5