BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0302000 Os06g0302000|AK106070
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393 82 3e-16
AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281 68 8e-12
AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625 62 5e-10
AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623 59 3e-09
AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627 59 4e-09
>AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393
Length = 392
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 86/219 (39%), Gaps = 33/219 (15%)
Query: 98 AFLPRHVADAIPFSADRFADVLAMFA-PASLAMAREIRWALDTCGQRAAALLPGEKAGCA 156
AFLPR A+ +PF +++F++ L F+ A A ++ ++ C R + GE+ CA
Sbjct: 203 AFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVS---GEEKYCA 259
Query: 157 TXXXXXXXXXXXXXGTRDVRAFSXXXXXXXXXXXXXRRGRYNVTSVRELXXXXXXXXXXX 216
T G VRA S + V + +
Sbjct: 260 TSLESMVDFSVSKLGKYHVRAVSTEVAKKNAPMQKYKIAAAGVKKLSD------------ 307
Query: 217 XXXXXXXXXXCHDLTYPYAVFYCHSTKPXXXXXXXXXXXXXGDGDGEGEAASPAKMEALA 276
CH YP+AVFYCH EGE AK A+A
Sbjct: 308 -----DKSVVCHKQKYPFAVFYCHKAMMTTVYAVPL----------EGENGMRAK--AVA 350
Query: 277 VCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLTKLSIVW 315
VCH +TS W ++ F VKPG V VCHFL + +VW
Sbjct: 351 VCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
>AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281
Length = 280
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 81/226 (35%), Gaps = 30/226 (13%)
Query: 96 LPAFLPRHVADAIPFSADRFADVLAMFAPASLA-MAREIRWALDTCGQRAAALLPGEKAG 154
LP L R AD IPF+ + +L F+ + + I+ L C +A + GE
Sbjct: 82 LPPLLTRQQADLIPFTKSKLDFLLDHFSITKDSPQGKAIKETLGHCDAKA---IEGEHKF 138
Query: 155 CATXXXXXXXXXXXXXGTR-DVRAFSXXXXXXXXXXXXXRRGRYN-VTSVRELXXXXXXX 212
C T G D++ + Y V + +EL
Sbjct: 139 CGTSLESLIDLVKKTMGYNVDLKVMTTKVMVPAQNSISYALHNYTFVEAPKELVGIKMLG 198
Query: 213 XXXXXXXXXXXXXXCHDLTYPYAVFYCHSTKPXXXXXXXXXXXXXGDGDGEGEAASPAKM 272
CH + YPYAV+YCH K DG PA
Sbjct: 199 --------------CHRMPYPYAVYYCHGHKGGSRVFEVNLVT----DDGRQRVVGPA-- 238
Query: 273 EALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLTKLSIVWVPR 318
VCH+DTS W AD+ F ++P VCHF +IVWV +
Sbjct: 239 ----VCHMDTSTWDADHVAFKVLKMEPRSAPVCHFFPLDNIVWVTK 280
>AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625
Length = 624
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 88/248 (35%), Gaps = 43/248 (17%)
Query: 75 FFRDALRPGSVXXXXXXXXXSLP--AFLPRHVADAIPFSADRFADVLAMF-APASLAMAR 131
FFR+A+ +P FLPR++ +PFS+ ++ +F A + +MA
Sbjct: 409 FFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAG 468
Query: 132 EIRWALDTCGQRAAALLPGEKAGCATXXXXXXXXXXXXXGTRDVRAFSXXXXXXXXXXXX 191
I A+ C +R A+ GE C G V +
Sbjct: 469 IISSAVSEC-ERPAS--HGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVI 525
Query: 192 XRRGRYNVTSVRELXXXXXXXXXXXXXXXXXXXXXCHDLTYPYAVFYCHSTKPXXXXXXX 251
+ N V CH YPY ++YCHS
Sbjct: 526 GKVNGINGGDVTR-------------------AVSCHQSLYPYLLYYCHSVPRVRVY--- 563
Query: 252 XXXXXXGDGDGEGEAASPAKME----ALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHF 307
E + P +E +A+CH+DTS W + F+A G PG++ VCH+
Sbjct: 564 -----------ETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHW 612
Query: 308 LTKLSIVW 315
+ + + W
Sbjct: 613 IFENDMTW 620
>AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623
Length = 622
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 227 CHDLTYPYAVFYCHSTKPXXXXXXXXXXXXXGDGDGEGEAASPAKME-ALAVCHLDTSRW 285
CH YPY ++YCHS + S AK+ +A+CH+DTS W
Sbjct: 540 CHQSLYPYLLYYCHSVPKVRVYESDLL-----------DPKSKAKINHGIAICHMDTSAW 588
Query: 286 RADNPFFVAHGVKPGEVSVCHFLTKLSIVW 315
A++ F+ G +PG++ VCH++ + + W
Sbjct: 589 GANHGAFMLLGSRPGQIEVCHWIFENDMNW 618
>AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627
Length = 626
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 88/246 (35%), Gaps = 38/246 (15%)
Query: 74 FFFRDALRPGSVXXXXXXXXXSLP--AFLPRHVADAIPFSADRFADVLAMF-APASLAMA 130
FF +L+ G+V +P +FLPR + +PFS + ++ +F A + M
Sbjct: 411 FFRESSLKEGTVIPMPDIKDK-MPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMG 469
Query: 131 REIRWALDTCGQRAAALLPGEKAGCATXXXXXXXXXXXXXGTRDVRAFSXXXXXXXXXXX 190
I A+ C +R ++ GE C G V
Sbjct: 470 GIITDAVTEC-ERPPSV--GETKRCVGSAEDMIDFATSVLGRSVVL-------------- 512
Query: 191 XXRRGRYNVTSVRELXXXXXXXXXXXXXXXXXXXXXCHDLTYPYAVFYCHSTKPXXXXXX 250
R NV +E CH YPY ++YCHS
Sbjct: 513 ---RTTENVAGSKE--KVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEA 567
Query: 251 XXXXXXXGDGDGEGEAASPAKME-ALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLT 309
E S K+ +A+CH+DTS W + F+A G KPG + VCH++
Sbjct: 568 DLL-----------ELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIF 616
Query: 310 KLSIVW 315
+ + W
Sbjct: 617 ENDMNW 622
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,635,417
Number of extensions: 190849
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 5
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)