Os04g0225700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BURP domain containing protein.
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Os04g0225700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BURP domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1003.39 | 1.49 | 6.73 | -4.09 | 1.15 | -4.26 | -1.26 | -11.7 | 1.28 | 7.34 | 1.386 | 4331 | -- | -- |
| 1242.95 | 1.64 | 6.65 | -3.18 | 1.03 | -3.99 | -1.24 | -- | 1.09 | 7.55 | 3.44 | 4388 | -- | -- |
| 1000.87 | 1.47 | 6.71 | -4.19 | 1.18 | -4.09 | -- | -11.6 | 1.29 | 7.45 | 1.51 | 4342 | -- | -- |
| 1200.21 | 1.61 | 6.58 | -2.18 | 1.17 | -3.81 | -- | -- | 1.58 | 8.53 | 3.422 | 4403 | -- | -- |
| 1065.59 | 1.52 | 6.71 | -3.93 | -- | -4.08 | -- | -10.6 | 1.37 | -- | 1.509 | 4295 | -- | -- |
| 1481.55 | 1.8 | 6.7 | -2.18 | 1.05 | -- | -1.54 | -- | 0.942 | 7.68 | -- | -- | -- | -- |
| 1488.28 | 1.81 | 6.7 | -2.22 | 1.04 | -- | -- | -- | 0.944 | 7.72 | -- | -- | -- | -- |
| 1165.55 | 1.59 | 6.61 | -2.14 | -- | -3.86 | -- | -- | 1.64 | -- | 2.758 | 8111 | -- | -- |
| 1324.56 | 1.7 | 6.48 | -- | 1.23 | -3.86 | -- | -- | 1.9 | 8.59 | 3.38 | 4411 | -- | -- |
| 1547.06 | 1.84 | 6.72 | -2.21 | -- | -- | -- | -- | 0.959 | -- | -- | -- | -- | -- |
| 1618.43 | 1.88 | 6.64 | -- | 1.03 | -- | -- | -- | 1.19 | 7.87 | -- | -- | -- | -- |
| 1098.16 | 1.54 | 6.45 | -- | -- | -3.64 | -- | -- | 2.24 | -- | 1.73 | 23914 | -- | -- |
| 1675.75 | 1.91 | 6.67 | -- | -- | -- | -- | -- | 1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 875.09 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 875.31 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 64 | 894.23 | temperature | 25 | 14400 | > th | dose dependent | sin | 6 | NA |
| 86 | 897.70 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 95 | 899.09 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 97 | 899.34 | temperature | 30 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 112 | 901.45 | temperature | 30 | 14400 | < th | dose independent | sin | 6 | NA |
| 128 | 903.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 131 | 903.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 20 |
| 134 | 903.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 139 | 903.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 145 | 903.61 | temperature | 30 | 14400 | > th | dose independent | sin | 6 | NA |
| 150 | 903.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 209 | 904.83 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 225 | 904.89 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 351 | 906.54 | temperature | 30 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 506 | 910.91 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 582 | 912.46 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 726 | 917.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 727 | 917.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 19 |
| 728 | 917.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 742 | 917.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 746 | 917.53 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 756 | 917.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 887 | 918.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 888 | 918.90 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |