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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0380100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.57 (0.0547) R2 : 0.504
β1 : -1.68 (0.318) R2dD : 0.0942 R2D : 0.228
β2 : 0.958 (0.109) R2dC : 0.0872 R2C : 0.0851
β3 : -2.16 (0.664) R2dE : 0.112 R2E : -0.151
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 28 (5.52) R2dD*E : 0.256 R2D*E : 0.123
γ1 : -0.81 (0.0969) R2dN8 : 0.119 R2N8 : 0.0354
σ : 0.842
deviance : 321.51
__
_____
C
peak time of C : 21.9
E
wheather : temperature
threshold : 29.35
memory length : 90
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
313.47 0.832 4.51 -1.21 0.962 -3.53 -1.52 38.6 -0.863 22.3 29.67 91 -- --
336.16 0.86 4.7 -2.95 0.998 1.07 -1.63 -- -0.893 22.5 29.67 91 -- --
321.51 0.842 4.57 -1.68 0.958 -2.16 -- 28 -0.81 21.9 29.35 90 -- --
346.21 0.872 4.7 -2.88 1.02 1.06 -- -- -0.884 22.1 29.8 63 -- --
373 0.904 4.53 -1.62 -- -1.75 -- 22.9 -0.74 -- 28.67 92 -- --
346.7 0.873 4.71 -2.88 0.973 -- -1.61 -- -0.927 22.2 -- -- -- --
355.89 0.883 4.71 -2.82 1 -- -- -- -0.919 21.6 -- -- -- --
405.7 0.938 4.68 -2.86 -- 0.936 -- -- -0.878 -- 30.18 121 -- --
560.31 1.11 4.64 -- 1 1.01 -- -- -0.588 21.6 32.4 13 -- --
415.36 0.952 4.68 -2.81 -- -- -- -- -0.921 -- -- -- -- --
564.76 1.11 4.64 -- 0.999 -- -- -- -0.606 21.4 -- -- -- --
619.68 1.16 4.61 -- -- 0.88 -- -- -0.593 -- 32.39 13 -- --
623.2 1.17 4.61 -- -- -- -- -- -0.61 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.59 humidity 90 14400 < th dose dependent rect. 1 4
2 289.94 humidity 80 14400 > th dose independent rect. 21 7
5 290.58 radiation 40 43200 > th dose independent rect. 13 19
6 290.66 radiation 40 43200 > th dose independent rect. 13 2
24 290.80 humidity 80 14400 < th dose independent rect. 21 3
27 290.89 radiation 20 43200 > th dose independent rect. 15 1
29 291.31 wind 1 43200 < th dose dependent rect. 17 9
30 291.42 wind 1 43200 < th dose dependent rect. 16 11
34 291.53 wind 1 43200 < th dose dependent rect. 14 13
54 291.68 radiation 40 43200 > th dose independent sin 14 NA
124 292.57 wind 1 43200 < th dose dependent rect. 20 6
153 292.92 wind 1 43200 < th dose dependent rect. 22 3
159 293.13 radiation 10 43200 < th dose dependent rect. 6 4
164 293.30 radiation 10 43200 < th dose dependent rect. 7 1
165 293.33 radiation 10 43200 > th dose independent rect. 16 16
167 293.35 humidity 90 14400 < th dose dependent rect. 4 1
186 293.43 wind 1 43200 < th dose independent rect. 20 6
210 293.54 radiation 40 43200 > th dose dependent rect. 13 1
214 293.61 radiation 10 43200 > th dose dependent rect. 13 3
244 293.82 radiation 10 43200 > th dose independent rect. 17 14
247 293.84 radiation 10 43200 < th dose dependent rect. 21 14
258 293.89 radiation 10 43200 > th dose dependent rect. 14 1
345 294.18 radiation 40 43200 < th dose dependent rect. 14 2
380 294.28 wind 9 14400 < th dose independent rect. 13 1
382 294.29 radiation 40 43200 < th dose independent rect. 12 2
384 294.30 wind 1 43200 < th dose independent rect. 19 8
409 294.35 radiation 20 43200 < th dose dependent rect. 15 20
430 294.46 radiation 10 43200 > th dose dependent sin 15 NA
437 294.47 radiation 40 43200 < th dose dependent rect. 11 8
438 294.47 radiation 40 43200 < th dose dependent rect. 11 10
447 294.48 wind 1 43200 < th dose independent rect. 22 4
453 294.52 radiation 40 43200 < th dose dependent sin 17 NA
480 294.58 radiation 10 43200 < th dose dependent sin 7 NA
557 294.76 wind 7 14400 > th dose dependent rect. 13 1
559 294.77 radiation 10 43200 < th dose independent rect. 9 1
671 294.93 radiation 20 43200 < th dose independent rect. 13 3
706 294.98 radiation 30 43200 > th dose independent no NA NA
707 294.98 radiation 30 43200 > th dose independent rect. 7 10
855 295.06 wind 9 14400 < th dose independent rect. 22 17