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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0409400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase isoenzyme 1 beta subunit precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0814) R2 : 0.539
β1 : -0.77 (0.295) R2dD : 0.0108 R2D : 0.0251
β2 : 0.998 (0.17) R2dC : 0.0351 R2C : 0.0327
β3 : 2.36 (0.664) R2dE : 0.088 R2E : 0.298
β4 : -4.38 (0.77) R2dD*C : 0.0332 R2D*C : 0.0365
β5 : -11 (2.43) R2dD*E : 0.139 R2D*E : 0.339
γ1 : -0.0648 (0.146) R2dN8 : 0.000291 R2N8 : -0.0109
σ : 1.24
deviance : 693.41
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_____
C
peak time of C : 4.85
E
wheather : wind
threshold : 7.194
memory length : 2831
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 2.4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
693.41 1.24 3.18 -0.77 0.998 2.36 -4.38 -11 -0.0648 4.85 7.194 2831 17.1 2.4
725.73 1.25 3.35 -0.0977 0.929 5.06 -4.65 -- -0.093 4.96 7 2640 16.9 1.85
742.01 1.27 3.17 -0.734 0.984 2.31 -- -11.1 -0.0359 4.79 7.2 2811 17.1 2.49
775.03 1.3 3.38 -0.119 0.897 5.3 -- -- -0.0687 4.86 7.1 2643 17.1 1.87
790.34 1.31 3.15 -0.716 -- 2.13 -- -12.2 0.0206 -- 7.2 2829 17.1 2.48
1206.71 1.63 3.57 -2.09 1.22 -- -5.7 -- -0.84 4.2 -- -- -- --
1297.58 1.69 3.55 -2.03 1.18 -- -- -- -0.808 4.1 -- -- -- --
819.37 1.33 3.39 0.0129 -- 5.51 -- -- -0.00378 -- 7.09 2641 17.1 1.8
774.88 1.3 3.38 -- 0.919 5.4 -- -- -0.0308 4.81 7.089 2620 17.1 1.87
1373.79 1.73 3.56 -1.99 -- -- -- -- -0.777 -- -- -- -- --
1406.68 1.75 3.5 -- 1.15 -- -- -- -0.582 4.13 -- -- -- --
813.06 1.33 3.38 -- -- 5.68 -- -- -0.0011 -- 7.07 2637 17.1 1.56
1477.89 1.79 3.51 -- -- -- -- -- -0.556 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 741.38 wind 7 4320 > th dose independent rect. 17 3
4 749.52 wind 7 4320 < th dose independent rect. 17 4
6 754.72 wind 7 4320 > th dose dependent rect. 17 2
9 758.61 wind 7 4320 < th dose independent rect. 18 1
42 788.59 wind 7 4320 > th dose independent rect. 15 11
61 793.93 wind 7 4320 < th dose independent rect. 15 11
183 824.26 wind 7 4320 > th dose independent sin 14 NA
209 827.47 radiation 1 1440 < th dose independent rect. 11 1
210 827.47 radiation 1 1440 < th dose dependent rect. 11 1
217 828.07 wind 7 4320 < th dose independent sin 14 NA
272 837.30 wind 5 4320 < th dose independent rect. 21 1
319 844.13 wind 5 4320 < th dose independent rect. 24 1
344 850.98 wind 5 4320 > th dose independent rect. 21 1
349 851.04 wind 5 4320 > th dose independent rect. 24 1
361 852.56 wind 5 4320 > th dose dependent sin 14 NA
448 863.99 radiation 1 1440 < th dose independent rect. 13 2
449 863.99 radiation 1 1440 < th dose dependent rect. 13 2
457 864.99 radiation 1 1440 < th dose dependent rect. 11 5
475 867.50 radiation 1 1440 > th dose independent rect. 13 2
533 875.40 humidity 80 4320 < th dose independent rect. 22 1
553 877.74 wind 3 4320 > th dose dependent rect. 24 1
641 887.50 humidity 80 4320 > th dose independent rect. 22 1
697 895.82 humidity 70 14400 < th dose dependent rect. 21 1
906 916.94 humidity 60 14400 < th dose independent rect. 6 1
908 916.94 humidity 60 14400 < th dose independent rect. 20 1
910 916.94 radiation 20 14400 > th dose independent rect. 17 1
961 916.94 humidity 60 14400 < th dose dependent rect. 6 1
965 916.94 radiation 20 14400 > th dose dependent rect. 17 1