BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0409400 Os10g0409400|AK120091
(344 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627 241 5e-64
AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623 235 3e-62
AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625 228 3e-60
AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393 110 1e-24
AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281 94 8e-20
>AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627
Length = 626
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 151/226 (66%), Gaps = 5/226 (2%)
Query: 120 NITIKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPF---KAEAVKSLF 176
N I+PG FFRE LKEG V+ MPDI +++ + SFLPRSI ++PF K +K +F
Sbjct: 403 NKWIEPGKFFRESSLKEGTVIPMPDIKDKM--PKRSFLPRSIITKLPFSTSKLGEIKRIF 460
Query: 177 GLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNG 236
N+T+ + + V +C+ PS GETKRCV SAEDMIDFA ++LG +V+R+T G
Sbjct: 461 HAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAG 520
Query: 237 PGESXXXXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINS 296
E T +VSCH+ L+PY++YYCHSVPK+RVYEA++L + +K+KIN
Sbjct: 521 SKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINH 580
Query: 297 GVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIAD 342
G+AICH+DTS+W H AF+ALG KPG+ +VCHWIF M W IAD
Sbjct: 581 GIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNWAIAD 626
>AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623
Length = 622
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 149/226 (65%), Gaps = 5/226 (2%)
Query: 120 NITIKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPF---KAEAVKSLF 176
N ++PG FFRE LKEG ++ MPDI +++ + SFLPRSI ++PF K +K +F
Sbjct: 399 NKWVEPGKFFRESMLKEGTLIWMPDIKDKM--PKRSFLPRSIVSKLPFSTSKIAEIKRVF 456
Query: 177 GLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNG 236
N+T+ + + V +C+ P+ ETKRCV SAEDMIDFA ++LG +V+R+T G
Sbjct: 457 HANDNSTMEGIITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAG 516
Query: 237 PGESXXXXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINS 296
E T SVSCH+ L+PY++YYCHSVPK+RVYE+++L ++K KIN
Sbjct: 517 SKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPKSKAKINH 576
Query: 297 GVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWVIAD 342
G+AICH+DTSAW A H AF+ LG +PGQ +VCHWIF M W IAD
Sbjct: 577 GIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNWAIAD 622
>AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625
Length = 624
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 161/258 (62%), Gaps = 9/258 (3%)
Query: 92 TYFQSLSSTVFI-DGCTFS-YSCTFTYEHTNIT--IKPGIFFREQELKEGNVVRMPDIAN 147
TY Q S V+ DG F+ YS + + ++ G FFRE LKEG +++MPDI +
Sbjct: 369 TYGQGQSFKVYTKDGVVFARYSNNVSSNGKTVNKWVEEGKFFREAMLKEGTLMQMPDIKD 428
Query: 148 ELTTARSSFLPRSIADRIPFKAEAVKSL---FGLEPNTTLAKAVDETVAQCQSSPSKGET 204
++ + +FLPR+I +PF + + + FG N+++A + V++C+ S GET
Sbjct: 429 KM--PKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGET 486
Query: 205 KRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESXXXXXXXXXXXXXXTSSVSCHEYL 264
KRCV SAEDMIDFA ++LG +VVR+T G + T +VSCH+ L
Sbjct: 487 KRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSL 546
Query: 265 FPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAICHIDTSAWNAGHPAFVALGGKPGQ 324
+PY++YYCHSVP++RVYE ++L ++ EKIN GVAICHIDTSAW+ H AF+ALG PGQ
Sbjct: 547 YPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQ 606
Query: 325 NKVCHWIFNGSMTWVIAD 342
+VCHWIF MTW I D
Sbjct: 607 IEVCHWIFENDMTWNIID 624
>AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393
Length = 392
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 7/217 (3%)
Query: 127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSL---FGLEPNTT 183
+FF E++L G + + A + +++FLPR A+ +PF +E F +E +
Sbjct: 175 LFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSE 234
Query: 184 LAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIV--VRSTVLPNGPGESX 241
A+ + +T+ +C++ GE K C TS E M+DF+V+ LG V V + V
Sbjct: 235 EAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAPMQK 294
Query: 242 XXXXXXXXXXXXXTSSVSCHEYLFPYMVYYCHSVPKIRVYEAEILSVQTKEKINSGVAIC 301
SV CH+ +P+ V+YCH VY + VA+C
Sbjct: 295 YKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAMMTTVYAVPLEGENGMRA--KAVAVC 352
Query: 302 HIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTW 338
H +TSAWN H AF L KPG VCH++ + W
Sbjct: 353 HKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
>AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281
Length = 280
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 13/224 (5%)
Query: 127 IFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAVKSL---FGLEPNTT 183
++F +LK G + + N+L L R AD IPF + L F + ++
Sbjct: 57 MYFTLNDLKLGTKLLIYFYKNDLQKL-PPLLTRQQADLIPFTKSKLDFLLDHFSITKDSP 115
Query: 184 LAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVR----STVLPNGPGE 239
KA+ ET+ C + +GE K C TS E +ID +G ++ ++ ++P
Sbjct: 116 QGKAIKETLGHCDAKAIEGEHKFCGTSLESLIDLVKKTMGYNVDLKVMTTKVMVPAQNSI 175
Query: 240 SXXXXXXXXXXXXXXTSSVS---CHEYLFPYMVYYCHSVPK-IRVYEAEILSVQTKEKIN 295
S + CH +PY VYYCH RV+E +++ ++++
Sbjct: 176 SYALHNYTFVEAPKELVGIKMLGCHRMPYPYAVYYCHGHKGGSRVFEVNLVTDDGRQRV- 234
Query: 296 SGVAICHIDTSAWNAGHPAFVALGGKPGQNKVCHWIFNGSMTWV 339
G A+CH+DTS W+A H AF L +P VCH+ ++ WV
Sbjct: 235 VGPAVCHMDTSTWDADHVAFKVLKMEPRSAPVCHFFPLDNIVWV 278
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,182,283
Number of extensions: 217436
Number of successful extensions: 455
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 5
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)