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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0496800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RAFTIN1a protein (RAFTIN1a anther protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.031) R2 : 0.00565
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0653) R2dN8 : 0.0073 R2N8 : 0.00565
σ : 0.584
deviance : 156.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.65 0.571 2.98 -0.363 0.0945 -0.538 -0.366 1.46 0.0638 12.1 1 16 -- --
149.3 0.569 2.97 -0.319 0.101 -0.404 -0.237 -- 0.0757 11.5 1.101 16 -- --
148.11 0.571 2.98 -0.364 0.11 -0.438 -- 1.18 0.0663 10 1 16 -- --
149.52 0.57 2.97 -0.32 0.107 -0.388 -- -- 0.0795 10.2 1.168 16 -- --
148.78 0.568 2.99 -0.373 -- -0.508 -- 1.32 0.0623 -- 1.018 16 -- --
153.31 0.58 2.97 -0.267 0.164 -- -0.0478 -- 0.0728 7.19 -- -- -- --
153.31 0.58 2.97 -0.268 0.165 -- -- -- 0.0728 7.05 -- -- -- --
150.21 0.571 2.97 -0.321 -- -0.386 -- -- 0.0793 -- 1.15 16 -- --
151.99 0.577 2.96 -- 0.113 -0.296 -- -- 0.119 9.83 1.168 16 -- --
154.74 0.581 2.97 -0.265 -- -- -- -- 0.0758 -- -- -- -- --
155.2 0.583 2.96 -- 0.162 -- -- -- 0.103 7.16 -- -- -- --
152.76 0.578 2.96 -- -- -0.297 -- -- 0.119 -- 1.11 14 -- --
156.59 0.584 2.97 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.90 temperature 20.0 30 > th dose dependent rect. 2 1
2 132.99 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 133.06 temperature 20.0 30 > th dose independent rect. 2 1
5 133.07 wind 3.0 30 < th dose dependent rect. 2 1
6 133.10 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 133.14 wind 3.0 30 < th dose independent rect. 2 1
14 133.26 humidity 80.0 30 > th dose independent rect. 2 1
19 133.32 temperature 10.0 30 > th dose independent rect. 2 1
21 133.32 temperature 30.0 30 < th dose independent rect. 2 1
22 133.32 humidity 50.0 30 > th dose independent rect. 2 1
26 133.32 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 133.32 radiation 1.0 30 < th dose independent rect. 2 1
33 133.32 precipitation 0.1 30 < th dose independent rect. 2 1
34 133.32 temperature 10.0 30 > th dose independent rect. 3 23
35 133.32 humidity 50.0 30 > th dose dependent rect. 2 1
37 133.32 radiation 1.0 30 < th dose dependent rect. 2 1
42 133.32 precipitation 0.1 30 < th dose dependent rect. 2 1
49 133.83 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 134.31 temperature 30.0 30 < th dose dependent rect. 2 1
58 134.92 wind 1.0 30 > th dose independent rect. 2 1
97 136.13 temperature 25.0 90 > th dose independent rect. 1 3
101 136.99 radiation 1.0 4320 < th dose dependent rect. 3 1
103 137.07 radiation 10.0 43200 < th dose dependent rect. 3 1
113 137.27 wind 9.0 1440 < th dose independent rect. 3 1
114 137.27 temperature 10.0 1440 > th dose independent rect. 3 1
117 137.27 temperature 30.0 1440 < th dose independent rect. 3 1
121 137.27 humidity 50.0 1440 > th dose independent rect. 3 1
130 137.27 atmosphere 995.0 1440 > th dose independent rect. 3 1
131 137.27 radiation 1.0 1440 < th dose independent rect. 3 1
151 137.27 temperature 10.0 1440 > th dose independent rect. 4 23
179 138.92 atmosphere 995.0 30 > th dose independent rect. 3 23
191 139.72 wind 9.0 30 < th dose independent rect. 3 23
197 140.37 precipitation 0.1 30 < th dose independent rect. 3 23
198 140.37 precipitation 0.1 30 < th dose dependent rect. 3 23
205 140.77 temperature 20.0 10 > th dose dependent rect. 2 3
234 142.84 atmosphere 1005.0 270 > th dose dependent rect. 24 3
245 143.48 atmosphere 1005.0 30 > th dose dependent rect. 2 3
271 144.28 atmosphere 1005.0 720 < th dose dependent rect. 10 2
272 144.28 atmosphere 1005.0 270 < th dose dependent rect. 8 9
277 144.38 atmosphere 1005.0 270 < th dose dependent rect. 9 6
278 144.40 atmosphere 1005.0 90 < th dose dependent rect. 10 8
296 144.63 temperature 25.0 1440 < th dose independent rect. 1 1
330 144.91 wind 1.0 10 > th dose independent rect. 5 23
359 145.25 temperature 25.0 270 < th dose independent rect. 19 12
373 145.39 humidity 50.0 30 > th dose independent rect. 3 23
395 145.52 atmosphere 995.0 4320 > th dose independent rect. 5 1
402 145.60 temperature 25.0 720 < th dose independent rect. 20 10
407 145.62 atmosphere 1005.0 10 < th dose dependent rect. 11 5
433 145.75 temperature 25.0 720 < th dose independent rect. 20 5
438 145.77 temperature 20.0 10 > th dose independent rect. 2 3
442 145.77 atmosphere 1005.0 270 < th dose dependent sin 0 NA
493 146.03 temperature 25.0 720 > th dose independent rect. 18 9
499 146.06 atmosphere 1005.0 30 > th dose independent rect. 2 3
507 146.09 atmosphere 1005.0 10 < th dose dependent rect. 11 1
569 146.30 radiation 40.0 10 < th dose independent rect. 6 20
580 146.32 radiation 40.0 10 < th dose independent rect. 3 23
619 146.42 temperature 20.0 10 < th dose dependent rect. 10 2
627 146.44 temperature 20.0 10 < th dose independent rect. 10 2
666 146.54 temperature 20.0 90 < th dose independent rect. 10 1
676 146.55 radiation 40.0 10 < th dose dependent rect. 6 20
690 146.58 atmosphere 1005.0 90 < th dose independent rect. 10 1
715 146.61 humidity 90.0 90 > th dose independent rect. 10 1
717 146.61 precipitation 0.1 90 > th dose independent rect. 10 1
740 146.61 humidity 90.0 90 > th dose dependent rect. 10 1
742 146.61 precipitation 0.1 90 > th dose dependent rect. 10 1
765 146.64 atmosphere 1005.0 90 < th dose independent rect. 10 3
783 146.70 wind 3.0 30 < th dose dependent rect. 2 4
813 146.79 wind 7.0 30 < th dose independent rect. 2 10
836 146.83 atmosphere 1015.0 720 < th dose dependent rect. 9 3
845 146.87 temperature 20.0 720 > th dose independent rect. 6 1
855 146.90 temperature 25.0 720 < th dose independent sin 12 NA
860 146.91 atmosphere 1005.0 720 < th dose independent rect. 7 5
894 146.99 temperature 25.0 270 > th dose independent sin 12 NA
895 146.99 atmosphere 1005.0 90 < th dose independent rect. 10 7
928 147.07 temperature 20.0 720 > th dose dependent rect. 5 3
971 147.13 temperature 20.0 720 < th dose independent rect. 6 1
980 147.14 wind 9.0 1440 < th dose independent rect. 3 3
981 147.14 temperature 10.0 1440 > th dose independent rect. 3 3
984 147.14 temperature 30.0 1440 < th dose independent rect. 3 3
988 147.14 humidity 50.0 1440 > th dose independent rect. 3 3
997 147.14 atmosphere 995.0 1440 > th dose independent rect. 3 3
998 147.14 radiation 20.0 1440 < th dose independent rect. 3 3