BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0496800 Os08g0496800|AK120942
(412 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393 145 4e-35
AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281 121 7e-28
AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627 100 2e-21
AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625 96 5e-20
AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623 94 1e-19
>AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393
Length = 392
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 8/219 (3%)
Query: 189 VFFHEEAVRVGERLPFYFPAATT--SALGFLPRRVADSIPFTAAALPAVLALFGVAPDTA 246
+FF E+ + G+ + F A FLPR A+++PF + L F V +
Sbjct: 175 LFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSE 234
Query: 247 EAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQA 306
EA M++T+ CE ++GE K+CATSLE++V+ +++ LG + A+++ + + AP+Q
Sbjct: 235 EAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAPMQK 294
Query: 307 YAVRA--VLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYXXXXXXXXXXXXXXXXXXXX 364
Y + A V + V CH Q YP+ V+ CH Y
Sbjct: 295 YKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAMMTTVY----AVPLEGENGMRAKAVA 350
Query: 365 XCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVW 403
CH NTS WNP H++FK+L KPG PVCH +P H+VW
Sbjct: 351 VCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
>AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281
Length = 280
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 12/225 (5%)
Query: 189 VFFHEEAVRVGERLPFYFPAATTSALG-FLPRRVADSIPFTAAALPAVLALFGVAPDTAE 247
++F +++G +L YF L L R+ AD IPFT + L +L F + D+ +
Sbjct: 57 MYFTLNDLKLGTKLLIYFYKNDLQKLPPLLTRQQADLIPFTKSKLDFLLDHFSITKDSPQ 116
Query: 248 AAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALG-TRDIAALASTLPRGGAPLQA 306
++ETL C+ + GE KFC TSLE+L++ +G D+ + + + +
Sbjct: 117 GKAIKETLGHCDAKAIEGEHKFCGTSLESLIDLVKKTMGYNVDLKVMTTKVMVPAQNSIS 176
Query: 307 YAVRAVLPVE------GAGFVACHDQAYPYTVYRCH-TTGPARAYXXXXXXXXXXXXXXX 359
YA+ VE G + CH YPY VY CH G +R +
Sbjct: 177 YALHNYTFVEAPKELVGIKMLGCHRMPYPYAVYYCHGHKGGSRVF---EVNLVTDDGRQR 233
Query: 360 XXXXXXCHTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWA 404
CH +TS W+ +HV+FK+L +P +PVCH P +IVW
Sbjct: 234 VVGPAVCHMDTSTWDADHVAFKVLKMEPRSAPVCHFFPLDNIVWV 278
>AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627
Length = 626
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 8/218 (3%)
Query: 190 FFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAA 249
FF E +++ G +P FLPR + +PF+ + L + +F ++
Sbjct: 411 FFRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGG 470
Query: 250 GMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAV 309
+ + + CE P GE+K C S E +++ A + LG + + T + +
Sbjct: 471 IITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGR---SVVLRTTENVAGSKEKVVI 527
Query: 310 RAVLPVEGAGF---VACHDQAYPYTVYRCHTTGPARAYXXXXXXXXXXXXXXXXXXXXXC 366
V + G V+CH YPY +Y CH+ R Y C
Sbjct: 528 GKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAI--C 585
Query: 367 HTNTSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWA 404
H +TS W P H +F LG+KPG VCH + + WA
Sbjct: 586 HMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNWA 623
>AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625
Length = 624
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 2/214 (0%)
Query: 190 FFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAA 249
FF E ++ G + FLPR + ++PF+++ + + +FG +++ A
Sbjct: 409 FFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAG 468
Query: 250 GMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAV 309
+ + CE P GE+K C S E +++ A + LG + + + V
Sbjct: 469 IISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKV 528
Query: 310 RAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYXXXXXXXXXXXXXXXXXXXXXCHTN 369
+ + V+CH YPY +Y CH+ R Y CH +
Sbjct: 529 NGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVY--ETDLLDPKSLEKINHGVAICHID 586
Query: 370 TSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVW 403
TS W+P H +F LG+ PG VCH + + W
Sbjct: 587 TSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620
>AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623
Length = 622
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 2/215 (0%)
Query: 190 FFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAA 249
FF E ++ G + FLPR + +PF+ + + + +F ++
Sbjct: 407 FFRESMLKEGTLIWMPDIKDKMPKRSFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEG 466
Query: 250 GMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAV 309
+ + +R CE P E+K C S E +++ A + LG + ++ + V
Sbjct: 467 IITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKV 526
Query: 310 RAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAYXXXXXXXXXXXXXXXXXXXXXCHTN 369
+ V+CH YPY +Y CH+ R Y CH +
Sbjct: 527 NGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVY--ESDLLDPKSKAKINHGIAICHMD 584
Query: 370 TSRWNPEHVSFKLLGTKPGGSPVCHLMPYGHIVWA 404
TS W H +F LLG++PG VCH + + WA
Sbjct: 585 TSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNWA 619
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,334,115
Number of extensions: 246593
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 5
Length of query: 412
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,337,553
Effective search space: 2592978983
Effective search space used: 2592978983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)