Os01g0733500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dehydration-induced protein RD22-like protein 1.
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Os01g0733500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dehydration-induced protein RD22-like protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.94 | 0.705 | 12.1 | 0.607 | 0.256 | -4.99 | -2.27 | -4.34 | 0.431 | 14 | 1.648 | 1516 | -- | -- |
| 225.56 | 0.699 | 12.2 | 0.187 | 0.122 | -4.6 | 1.83 | -- | 0.281 | 3.48 | 2.381 | 1558 | -- | -- |
| 234.93 | 0.714 | 12.2 | 0.122 | 0.113 | -4.44 | -- | 0.289 | 0.268 | 11.1 | 2.363 | 1543 | -- | -- |
| 234.75 | 0.714 | 12.2 | 0.16 | 0.143 | -4.49 | -- | -- | 0.281 | 9.94 | 2.38 | 1541 | -- | -- |
| 235.5 | 0.715 | 12.2 | 0.13 | -- | -4.58 | -- | 0.165 | 0.271 | -- | 2.384 | 1547 | -- | -- |
| 407.77 | 0.947 | 12.1 | 0.982 | 1.13 | -- | -1.61 | -- | 0.889 | 12.5 | -- | -- | -- | -- |
| 418.45 | 0.958 | 12.1 | 0.918 | 1.13 | -- | -- | -- | 0.879 | 12.2 | -- | -- | -- | -- |
| 235.52 | 0.715 | 12.2 | 0.148 | -- | -4.6 | -- | -- | 0.274 | -- | 2.372 | 1547 | -- | -- |
| 235.31 | 0.714 | 12.2 | -- | 0.122 | -4.58 | -- | -- | 0.258 | 9 | 2.343 | 1543 | -- | -- |
| 499.24 | 1.04 | 12.1 | 0.881 | -- | -- | -- | -- | 0.862 | -- | -- | -- | -- | -- |
| 440.65 | 0.982 | 12.1 | -- | 1.12 | -- | -- | -- | 0.777 | 12.2 | -- | -- | -- | -- |
| 236.04 | 0.716 | 12.2 | -- | -- | -4.66 | -- | -- | 0.252 | -- | 2.338 | 1545 | -- | -- |
| 519.7 | 1.06 | 12.1 | -- | -- | -- | -- | -- | 0.764 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 3 | 228.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 11 | 230.67 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 13 | 231.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 36 | 234.99 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 38 | 235.78 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 40 | 235.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 46 | 236.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 47 | 236.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 52 | 237.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 57 | 237.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 65 | 237.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 83 | 238.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 84 | 238.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 85 | 238.53 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 119 | 238.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 131 | 239.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 143 | 239.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 144 | 239.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 156 | 239.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 159 | 239.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 163 | 240.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 165 | 240.07 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 211 | 240.08 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 215 | 240.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 218 | 240.13 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 219 | 240.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 220 | 240.16 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 223 | 240.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 242 | 240.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 249 | 240.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 271 | 240.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 276 | 240.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 280 | 240.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 294 | 241.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 346 | 242.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 401 | 243.10 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 431 | 243.80 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 440 | 243.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 469 | 244.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 472 | 244.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 522 | 245.56 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 542 | 245.91 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 605 | 246.76 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 611 | 246.93 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 801 | 253.47 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 834 | 254.41 | humidity | 60 | 1440 | > th | dose dependent | sin | 22 | NA |
| 876 | 255.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 880 | 255.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 899 | 255.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 942 | 256.49 | humidity | 60 | 1440 | > th | dose dependent | rect. | 4 | 18 |