BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0733500 Os01g0733500|AK106043
(429 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393 276 2e-74
AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281 148 4e-36
AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625 125 5e-29
AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627 124 1e-28
AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623 120 2e-27
>AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393
Length = 392
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 164/239 (68%), Gaps = 9/239 (3%)
Query: 192 PFIYNYAATETQLHDDPNVALFFLEKDLHPGKTMAVHFTATTA-GEK--FLPRSEADAMP 248
PF+YNYAA ETQLHDDPN ALFFLEKDL GK M V F A G K FLPR EA+ +P
Sbjct: 155 PFVYNYAAKETQLHDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVP 214
Query: 249 FSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLG 308
F SEK E L RFSV+ GS EA M +T+ +CEA GE K CATSLESMVDF+ S LG
Sbjct: 215 FGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLG 274
Query: 309 TSHVRAASTVVGKEGSPEQEYTVTA--VKRAAAGGDQDQLVACHAEPYAYAVFACHLTRA 366
HVRA ST V K+ +P Q+Y + A VK+ + D+ V CH + Y +AVF CH
Sbjct: 275 KYHVRAVSTEVAKKNAPMQKYKIAAAGVKKLS----DDKSVVCHKQKYPFAVFYCHKAMM 330
Query: 367 TRAYAVSMAGRDGTGVEAVAVCHADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVW 425
T YAV + G +G +AVAVCH +T+ WNP H+AF+VLKVKPGTVPVCHFLP+ HVVW
Sbjct: 331 TTVYAVPLEGENGMRAKAVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
>AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281
Length = 280
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 13/230 (5%)
Query: 206 DDPNVALFFLEKDLHPGKTMAVHFTATTAGEK--FLPRSEADAMPFSSEKVPEILSRFSV 263
DDP++ ++F DL G + ++F + L R +AD +PF+ K+ +L FS+
Sbjct: 51 DDPSLYMYFTLNDLKLGTKLLIYFYKNDLQKLPPLLTRQQADLIPFTKSKLDFLLDHFSI 110
Query: 264 KPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTS---HVRAASTVVG 320
S + + +TL C+A +GE K C TSLES++D ++G + V +V
Sbjct: 111 TKDSPQGKAIKETLGHCDAKAIEGEHKFCGTSLESLIDLVKKTMGYNVDLKVMTTKVMVP 170
Query: 321 KEGSPE---QEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRA-TRAYAVSMAG 376
+ S YT + G +++ CH PY YAV+ CH + +R + V++
Sbjct: 171 AQNSISYALHNYTFVEAPKELVGI---KMLGCHRMPYPYAVYYCHGHKGGSRVFEVNLVT 227
Query: 377 RDGTG-VEAVAVCHADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVW 425
DG V AVCH DT+ W+ HVAF+VLK++P + PVCHF P D++VW
Sbjct: 228 DDGRQRVVGPAVCHMDTSTWDADHVAFKVLKMEPRSAPVCHFFPLDNIVW 277
>AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625
Length = 624
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 101/220 (45%), Gaps = 13/220 (5%)
Query: 213 FFLEKDLHPGKTMAV-HFTATTAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAA 271
FF E L G M + FLPR+ +PFSS + EI F S A
Sbjct: 409 FFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAG 468
Query: 272 EMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTS-HVRAASTVVGKEGSPEQEYT 330
++ + +CE P + GE K C S E M+DFATS LG VR VVG ++
Sbjct: 469 IISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVG-----SKKKV 523
Query: 331 VTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRATRAYAVSMAGRDGTGVE----AVA 386
V GGD + V+CH Y Y ++ CH R Y + D +E VA
Sbjct: 524 VIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLL--DPKSLEKINHGVA 581
Query: 387 VCHADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVWT 426
+CH DT+ W+P H AF L PG + VCH++ ++ + W
Sbjct: 582 ICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTWN 621
>AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627
Length = 626
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 98/217 (45%), Gaps = 9/217 (4%)
Query: 213 FFLEKDLHPGKTMAV-HFTATTAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAA 271
FF E L G + + FLPRS +PFS+ K+ EI F S
Sbjct: 411 FFRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGG 470
Query: 272 EMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTSHV-RAASTVVGKEGSPEQEYT 330
+ + +CE PP+ GE K C S E M+DFATS LG S V R V G +E
Sbjct: 471 IITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAG-----SKEKV 525
Query: 331 VTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRATRAYAVSMAGRDGTGV--EAVAVC 388
V GG + V+CH Y Y ++ CH R Y + + +A+C
Sbjct: 526 VIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAIC 585
Query: 389 HADTAGWNPKHVAFQVLKVKPGTVPVCHFLPQDHVVW 425
H DT+ W P H AF L KPG + VCH++ ++ + W
Sbjct: 586 HMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNW 622
>AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623
Length = 622
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 90/191 (47%), Gaps = 8/191 (4%)
Query: 238 FLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLE 297
FLPRS +PFS+ K+ EI F S + +R+CE PP E K C S E
Sbjct: 433 FLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGIITDAVRECERPPTVSETKRCVGSAE 492
Query: 298 SMVDFATSSLGTSHV-RAASTVVGKEGSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAY 356
M+DFATS LG S V R +V G +E + GG + V+CH Y Y
Sbjct: 493 DMIDFATSVLGRSVVLRTTESVAG-----SKEKVMIGKVNGINGGRVTKSVSCHQSLYPY 547
Query: 357 AVFACHLTRATRAYAVSMAGRDGTGV--EAVAVCHADTAGWNPKHVAFQVLKVKPGTVPV 414
++ CH R Y + +A+CH DT+ W H AF +L +PG + V
Sbjct: 548 LLYYCHSVPKVRVYESDLLDPKSKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEV 607
Query: 415 CHFLPQDHVVW 425
CH++ ++ + W
Sbjct: 608 CHWIFENDMNW 618
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,401,025
Number of extensions: 185158
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 5
Length of query: 429
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 328
Effective length of database: 8,337,553
Effective search space: 2734717384
Effective search space used: 2734717384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)