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Os11g0170900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BURP domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.57 (0.0948) R2 : 0.426
β1 : -3.82 (0.352) R2dD : 0.192 R2D : -0.0123
β2 : 1.1 (0.234) R2dC : 0.0259 R2C : -0.0508
β3 : -6.19 (0.492) R2dE : 0.229 R2E : -0.144
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.6 (1.58) R2dD*E : 0.237 R2D*E : 0.0257
γ1 : 1.27 (0.194) R2dN8 : 0.0791 R2N8 : 0.0251
σ : 1.68
deviance : 1297.48
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C
peak time of C : 6.4
E
wheather : radiation
threshold : 39.93
memory length : 5388
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 0.631

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1317.4 1.71 9.56 -3.87 1.05 -6.52 -1.46 -21.9 1.21 6.83 40.16 5383 14 0.959
1594.97 1.86 9.88 -3.58 0.893 -5.29 -1.56 -- 1.43 6.45 37.13 5213 13.9 0.2
1297.48 1.68 9.57 -3.82 1.1 -6.19 -- -20.6 1.27 6.4 39.93 5388 14 0.631
1548.16 1.83 9.87 -2.86 1.17 -4.82 -- -- 1.74 6.11 35.75 5395 13.9 0.214
1342.82 1.71 9.61 -3.85 -- -5.8 -- -19.7 1.34 -- 39.34 5180 14 0.65
1932.11 2.06 9.97 -2.34 1.1 -- -1.16 -- 0.907 7.83 -- -- -- --
1935.99 2.06 9.97 -2.37 1.1 -- -- -- 0.908 7.84 -- -- -- --
1535.14 1.82 9.72 -3.24 -- -4.74 -- -- 1.89 -- -4.583 12103 14.2 0.117
1732.91 1.94 9.87 -- 1.16 -3.98 -- -- 1.89 6.36 35.63 5490 13.9 0.189
2001.41 2.09 10 -2.36 -- -- -- -- 0.923 -- -- -- -- --
2084.4 2.14 9.91 -- 1.08 -- -- -- 1.17 7.99 -- -- -- --
1615.48 1.87 9.78 -- -- -3.9 -- -- 2.41 -- 30 5518 14 0.0333
2148.36 2.16 9.94 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1214.48 temperature 25 14400 > th dose dependent rect. 7 2
26 1242.32 temperature 30 14400 < th dose independent rect. 9 1
29 1243.42 temperature 25 14400 > th dose dependent rect. 24 10
43 1248.66 temperature 25 14400 < th dose independent rect. 6 1
44 1248.82 temperature 30 14400 > th dose dependent rect. 11 1
45 1249.44 temperature 25 14400 > th dose independent rect. 6 1
53 1253.04 temperature 30 14400 < th dose independent rect. 22 13
56 1253.10 temperature 30 14400 < th dose independent rect. 19 16
62 1253.31 temperature 30 14400 < th dose independent rect. 4 7
64 1253.34 temperature 30 14400 < th dose independent rect. 2 9
77 1254.27 temperature 30 14400 > th dose independent rect. 9 2
114 1257.45 temperature 30 14400 > th dose independent rect. 8 4
145 1258.24 temperature 30 14400 < th dose independent sin 7 NA
202 1261.07 temperature 25 14400 > th dose dependent sin 6 NA
220 1262.13 temperature 30 14400 > th dose independent sin 7 NA
260 1263.85 wind 5 14400 < th dose dependent rect. 14 1
380 1272.17 wind 3 14400 > th dose independent rect. 14 1
433 1277.85 wind 3 14400 < th dose independent rect. 14 1
442 1278.93 temperature 30 14400 < th dose independent rect. 13 1
535 1282.59 temperature 30 14400 > th dose independent rect. 13 1
635 1287.90 temperature 25 14400 > th dose dependent rect. 6 20
734 1290.87 temperature 25 14400 > th dose dependent no NA NA
778 1292.65 humidity 80 14400 < th dose dependent rect. 19 2
924 1295.09 temperature 30 14400 < th dose independent rect. 8 17
925 1295.09 temperature 30 14400 < th dose independent rect. 8 19
926 1295.09 temperature 30 14400 < th dose independent rect. 8 21
931 1295.10 temperature 30 14400 < th dose independent rect. 4 21
935 1295.10 temperature 30 14400 < th dose independent rect. 4 23
938 1295.11 temperature 30 14400 < th dose independent no NA NA