BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0547500 Os09g0547500|AK062595
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0547500 Similar to Lysine decarboxylase-like protein 408 e-114
Os02g0628000 269 1e-72
Os04g0518800 Similar to Lysine decarboxylase-like protein 266 9e-72
Os10g0479500 Similar to Lysine decarboxylase-like protein 259 1e-69
Os03g0109300 Similar to Lysine decarboxylase-like protein 256 1e-68
Os01g0588900 Conserved hypothetical protein 730 family protein 245 2e-65
Os05g0591600 Similar to Lysine decarboxylase-like protein 231 4e-61
Os05g0541200 Conserved hypothetical protein 730 family protein 225 2e-59
Os01g0708500 Conserved hypothetical protein 730 family protein 223 6e-59
Os03g0857900 Similar to Lysine decarboxylase-like protein 223 9e-59
Os03g0697200 Similar to Lysine decarboxylase-like protein 191 3e-49
>Os09g0547500 Similar to Lysine decarboxylase-like protein
Length = 227
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/227 (92%), Positives = 211/227 (92%)
Query: 1 MYISSPHTSHFTSIDRSPAVVSESDRSMEEAAAAADMNGGVHQSRFRRVCVFCGSSSGKR 60
MYISSPHTSHFTSIDRSPAVVSESDRSMEEAAAAADMNGGVHQSRFRRVCVFCGSSSGKR
Sbjct: 1 MYISSPHTSHFTSIDRSPAVVSESDRSMEEAAAAADMNGGVHQSRFRRVCVFCGSSSGKR 60
Query: 61 RSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGGHVIGVIPTTLMXXXXXX 120
RSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGGHVIGVIPTTLM
Sbjct: 61 RSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGGHVIGVIPTTLMGKEVTG 120
Query: 121 XXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEVVEVIAWAQLGIHAKPVGLLNV 180
SMHERKAEMARRSDAFVALPGGYGTLEEVVEVIAWAQLGIHAKPVGLLNV
Sbjct: 121 ETVGEVREVGSMHERKAEMARRSDAFVALPGGYGTLEEVVEVIAWAQLGIHAKPVGLLNV 180
Query: 181 DGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLEEYVPV 227
DGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLEEYVPV
Sbjct: 181 DGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLEEYVPV 227
>Os02g0628000
Length = 289
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/198 (67%), Positives = 152/198 (76%), Gaps = 3/198 (1%)
Query: 29 EEAAAAADMNGGVHQSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSL 88
EE A M V QSRFRRVCVFCGSS GK++ Y+DAA+ELGKELVAR +DLVYGGGS+
Sbjct: 6 EETTAEVAM---VVQSRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSV 62
Query: 89 GLMGEVAEAVRNGGGHVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVA 148
GLMG V++AV NGG HVIGVIP TLM MH+RKAEMAR+SDAF+A
Sbjct: 63 GLMGLVSQAVHNGGRHVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIA 122
Query: 149 LPGGYGTLEEVVEVIAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLF 208
LPGGYGTLEE++EVIAWAQLGIH KPVGLLNVDGYY+ LL+F+DKAV +GFI PS RH+
Sbjct: 123 LPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHII 182
Query: 209 VSAPDAPSLVHKLEEYVP 226
V AP L+ KLEEY P
Sbjct: 183 VLAPTPKELIEKLEEYSP 200
>Os04g0518800 Similar to Lysine decarboxylase-like protein
Length = 250
Score = 266 bits (680), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 127/184 (69%), Positives = 146/184 (79%)
Query: 43 QSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGG 102
QSRFRR+CVFCGSS GK++SY+DAAVELGKELVAR +DLVYGGGS+GLMG V++AV NGG
Sbjct: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDLVYGGGSVGLMGLVSQAVYNGG 83
Query: 103 GHVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEVVEV 162
HVIGVIP TLM MH+RKAEMAR+SDAF+ALPGGYGTLEE++EV
Sbjct: 84 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 143
Query: 163 IAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLE 222
IAWAQLGIH KPVGLLNVDGYY+ LL+F+DKAV + FI PS RH+ V AP L+ KLE
Sbjct: 144 IAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLE 203
Query: 223 EYVP 226
Y P
Sbjct: 204 AYSP 207
>Os10g0479500 Similar to Lysine decarboxylase-like protein
Length = 215
Score = 259 bits (662), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/186 (67%), Positives = 145/186 (77%)
Query: 41 VHQSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRN 100
+ QSRF+R+CVFCGSS GK+RSY DAA+ELG ELVAR +DLVYGGGS+GLMG V++AV +
Sbjct: 12 MRQSRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFD 71
Query: 101 GGGHVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEVV 160
GG HVIGVIP TLM MH+RKAEMAR+SDAF+ALPGGYGTLEE++
Sbjct: 72 GGRHVIGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIALPGGYGTLEELL 131
Query: 161 EVIAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHK 220
EVI WAQLGIH KPVGLLNVDGYY+ LL F+DKAV +GFI S R + V AP A L+ K
Sbjct: 132 EVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVMAPTAEELMDK 191
Query: 221 LEEYVP 226
LEEYVP
Sbjct: 192 LEEYVP 197
>Os03g0109300 Similar to Lysine decarboxylase-like protein
Length = 211
Score = 256 bits (653), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/184 (66%), Positives = 144/184 (78%)
Query: 43 QSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGG 102
+SRF+R CVFCGSS G + +YRDAAV+L KELVAR +DLVYGGGS+GLMG V++AV +GG
Sbjct: 10 ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGG 69
Query: 103 GHVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEVVEV 162
HVIGVIP TLM MH+RKAEMAR+SDAF+ALPGGYGTLEE++EV
Sbjct: 70 RHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 129
Query: 163 IAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLE 222
I WAQLGIH KPVGLLNVDGYY+ LL F+D+AV +GFI PS R + VSAP A L+ KLE
Sbjct: 130 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLE 189
Query: 223 EYVP 226
EYVP
Sbjct: 190 EYVP 193
>Os01g0588900 Conserved hypothetical protein 730 family protein
Length = 242
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/187 (64%), Positives = 143/187 (76%)
Query: 40 GVHQSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVR 99
G +SRFRR+CV+CGS+ G++ SY+DAAVELGKELV R +DLVYGGGS+GLMG V+ AV
Sbjct: 29 GERRSRFRRICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVH 88
Query: 100 NGGGHVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEV 159
+GG HVIGVIP +LM MHERKAEMAR +DAF+ALPGGYGTLEE+
Sbjct: 89 DGGRHVIGVIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPGGYGTLEEL 148
Query: 160 VEVIAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVH 219
+EVI WAQLGIH KPVGLLNVDG+YD L+F+D AV++GFI R + +SAP A LV
Sbjct: 149 LEVITWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVL 208
Query: 220 KLEEYVP 226
KLEEYVP
Sbjct: 209 KLEEYVP 215
>Os05g0591600 Similar to Lysine decarboxylase-like protein
Length = 275
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/190 (60%), Positives = 138/190 (72%), Gaps = 9/190 (4%)
Query: 46 FRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGGHV 105
FRR+CV+CGS+ GK+ SY+DAAV+LGKELV R +DLVYGGGS+GLMG V+ AV GG HV
Sbjct: 57 FRRICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHV 116
Query: 106 IGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALP---------GGYGTL 156
IG+IP +LM MHERKAEMAR +DAF+ALP GGYGTL
Sbjct: 117 IGIIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTL 176
Query: 157 EEVVEVIAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPS 216
EE++EVI WAQLGIH KPVGLLNVDG+Y+ LL+F+D AV +GFI R + +SAP A
Sbjct: 177 EELLEVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKE 236
Query: 217 LVHKLEEYVP 226
LV KLE+YVP
Sbjct: 237 LVMKLEDYVP 246
>Os05g0541200 Conserved hypothetical protein 730 family protein
Length = 223
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/182 (60%), Positives = 131/182 (71%)
Query: 44 SRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGG 103
SRF +CVFCGS++G+RR + DAA++LG ELV R VDLVYGGGS+GLMG +A V +GG
Sbjct: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
Query: 104 HVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEVVEVI 163
V+GVIP LM MHERKAEMARRS AF+ALPGGYGT+EE++E+I
Sbjct: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
Query: 164 AWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLEE 223
W QLGIH KPVGLLNVDGYYD LLA DK A+GFI R +FVSAP A L+ K+E+
Sbjct: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
Query: 224 YV 225
Y
Sbjct: 194 YT 195
>Os01g0708500 Conserved hypothetical protein 730 family protein
Length = 223
Score = 223 bits (569), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 106/183 (57%), Positives = 134/183 (73%)
Query: 43 QSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGG 102
+ RF R+CVFCGS++G R + DAA++LG+ELV+R ++LVYGGGS+GLMG +A+ V +GG
Sbjct: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
Query: 103 GHVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEVVEV 162
V+GVIP LM MHERKAEMAR+SDAF+ALPGGYGT+EE++E+
Sbjct: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
Query: 163 IAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLE 222
I W+QLGIH KPVGLLNVDGYYD LLA DK A+GFI R + VSAP A L+ K+E
Sbjct: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
Query: 223 EYV 225
+Y
Sbjct: 195 QYT 197
>Os03g0857900 Similar to Lysine decarboxylase-like protein
Length = 246
Score = 223 bits (568), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 123/209 (58%), Positives = 151/209 (72%), Gaps = 5/209 (2%)
Query: 23 ESDRSMEEAAAAADMNGGVHQ-----SRFRRVCVFCGSSSGKRRSYRDAAVELGKELVAR 77
E+ R + ++ A+ N + SRFRRVCVFCGSS GK+ SY+ AAV+LG++LV R
Sbjct: 4 ENSREQQPESSPANNNSKKKKKKKTASRFRRVCVFCGSSPGKKASYQVAAVQLGQQLVER 63
Query: 78 KVDLVYGGGSLGLMGEVAEAVRNGGGHVIGVIPTTLMXXXXXXXXXXXXXXXXSMHERKA 137
+DLVYGGGS+GLMG V+ AV GGGHV+GV+P ++ SMH+RKA
Sbjct: 64 GIDLVYGGGSVGLMGLVSRAVHGGGGHVVGVVPNGVLPRELIGETLGEVRAVGSMHQRKA 123
Query: 138 EMARRSDAFVALPGGYGTLEEVVEVIAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVAD 197
EMAR SDAF+ALPGGYGTLEE++EVI WAQL IH KPVGLLNVDGYYD LLAF+DKAV +
Sbjct: 124 EMARESDAFIALPGGYGTLEELLEVITWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHE 183
Query: 198 GFIPPSHRHLFVSAPDAPSLVHKLEEYVP 226
GF+ P R + V+AP A L+ KLEEYVP
Sbjct: 184 GFVSPPARRIIVAAPTASDLLCKLEEYVP 212
>Os03g0697200 Similar to Lysine decarboxylase-like protein
Length = 230
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/177 (57%), Positives = 130/177 (73%)
Query: 47 RRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGGHVI 106
R +CVFCGS G R S+ AA++LGK+LV R++DLVYGGGS GLMG V++ V +GG HV+
Sbjct: 21 RTICVFCGSRRGNRPSFSAAALDLGKQLVERELDLVYGGGSGGLMGLVSKTVHDGGRHVL 80
Query: 107 GVIPTTLMXXXXXXXXXXXXXXXXSMHERKAEMARRSDAFVALPGGYGTLEEVVEVIAWA 166
GVIP+ L+ MHERK+EMA+ +DAF+ALPGGYGT+EE++E+IAWA
Sbjct: 81 GVIPSALLPEEVSGETLGEAKVVRDMHERKSEMAKHADAFIALPGGYGTIEELLEIIAWA 140
Query: 167 QLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLEE 223
QLGIH KPVGLLNVDGYY+ LL+ DK V +GFI + R++FV A +A L+ KL E
Sbjct: 141 QLGIHNKPVGLLNVDGYYNNLLSLFDKGVEEGFIDAAARNIFVLADNAGELLTKLTE 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,298,472
Number of extensions: 350137
Number of successful extensions: 1062
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 11
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)