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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0591600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lysine decarboxylase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0377) R2 : 0.503
β1 : 1.11 (0.138) R2dD : 0.0734 R2D : 0.0478
β2 : 1.95 (0.105) R2dC : 0.44 R2C : 0.188
β3 : -1.66 (0.121) R2dE : 0.246 R2E : -0.0206
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.203 (0.0806) R2dN8 : 0.00909 R2N8 : 0.00293
σ : 0.704
deviance : 228.72
__
_____
C
peak time of C : 7.36
E
wheather : radiation
threshold : 0.83
memory length : 95
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.12 0.702 4.15 1.08 1.96 -1.69 0.503 -1.85 0.201 7.33 0.9602 90 22.9 --
228.81 0.705 4.15 1.1 1.97 -1.68 0.126 -- 0.199 7.36 0.83 97 22.7 --
223.5 0.696 4.15 1.09 1.97 -1.66 -- -1.62 0.196 7.35 0.8396 94 22.8 --
228.72 0.704 4.14 1.11 1.95 -1.66 -- -- 0.203 7.36 0.83 95 22.9 --
352.38 0.879 4.18 1.11 -- -0.978 -- -0.5 0.291 -- 1.784 6 2.66 --
269.29 0.769 4.13 1.08 1.62 -- 0.593 -- 0.3 9.77 -- -- -- --
270.59 0.77 4.13 1.1 1.62 -- -- -- 0.3 9.71 -- -- -- --
290.58 0.797 4.17 1.14 -- -1.37 -- -- 0.315 -- 9.28 2 7.9 --
261.84 0.754 4.15 -- 1.98 -1.65 -- -- 0.175 7.33 0.7373 105 23 --
426.44 0.965 4.17 1.09 -- -- -- -- 0.302 -- -- -- -- --
302.67 0.814 4.16 -- 1.62 -- -- -- 0.177 9.66 -- -- -- --
300.76 0.81 4.2 -- -- -1.57 -- -- 0.173 -- 35 3 8.57 --
457.69 0.999 4.2 -- -- -- -- -- 0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 223.06 radiation 1.0 90 < th dose independent rect. 1 15
2 223.22 radiation 1.0 90 < th dose independent sin 5 NA
3 223.33 radiation 1.0 90 > th dose independent sin 5 NA
4 223.40 atmosphere 1000.0 10 > th dose independent rect. 6 19
11 223.89 radiation 1.0 90 < th dose independent rect. 1 10
13 223.93 radiation 1.0 90 < th dose independent rect. 1 7
17 224.13 wind 9.0 90 < th dose dependent rect. 5 9
23 224.63 radiation 1.0 90 < th dose dependent sin 4 NA
28 225.00 wind 9.0 10 < th dose dependent rect. 6 19
31 225.17 wind 9.0 10 < th dose dependent rect. 6 8
34 225.27 wind 5.0 10 < th dose dependent rect. 24 6
37 225.40 wind 9.0 90 < th dose dependent rect. 5 20
38 225.51 radiation 1.0 90 < th dose dependent rect. 1 15
46 225.72 wind 7.0 10 < th dose independent rect. 6 19
63 226.28 radiation 1.0 90 < th dose dependent rect. 1 10
65 226.32 radiation 1.0 90 < th dose dependent rect. 1 7
71 226.36 humidity 70.0 10 > th dose dependent rect. 24 6
74 226.40 temperature 10.0 270 > th dose dependent rect. 23 6
78 226.56 temperature 10.0 270 > th dose dependent rect. 24 3
84 226.70 humidity 80.0 270 > th dose independent rect. 24 3
104 227.20 temperature 10.0 10 > th dose dependent rect. 1 5
111 227.35 wind 5.0 90 < th dose independent rect. 5 20
118 227.54 temperature 15.0 270 > th dose independent rect. 3 22
120 227.58 radiation 10.0 10 < th dose independent rect. 1 5
126 227.68 humidity 80.0 10 > th dose independent rect. 1 5
128 227.70 wind 3.0 270 < th dose independent rect. 1 2
133 227.75 radiation 1.0 90 > th dose independent rect. 4 10
150 227.96 wind 9.0 270 < th dose dependent rect. 1 2
175 228.23 humidity 50.0 270 > th dose dependent rect. 1 2
182 228.29 atmosphere 995.0 270 > th dose independent rect. 3 21
183 228.30 wind 7.0 270 < th dose independent rect. 3 21
187 228.33 wind 7.0 90 < th dose independent rect. 5 9
219 228.72 wind 5.0 270 < th dose independent rect. 4 7
231 228.87 temperature 15.0 10 > th dose independent rect. 6 19
256 229.19 radiation 40.0 10 < th dose dependent rect. 1 5
259 229.23 atmosphere 1010.0 10 < th dose independent rect. 24 6
265 229.27 precipitation 0.1 270 < th dose independent rect. 1 2
266 229.27 precipitation 0.1 270 < th dose dependent rect. 1 2
268 229.29 wind 9.0 10 < th dose independent rect. 1 5
269 229.29 temperature 10.0 10 > th dose independent rect. 1 5
271 229.29 temperature 30.0 10 < th dose independent rect. 1 5
272 229.29 humidity 50.0 10 > th dose independent rect. 1 5
275 229.29 atmosphere 995.0 10 > th dose independent rect. 1 5
292 229.37 radiation 1.0 10 > th dose independent rect. 6 8
295 229.40 temperature 10.0 270 > th dose independent rect. 1 2
297 229.40 temperature 30.0 270 < th dose independent rect. 1 2
298 229.40 humidity 50.0 270 > th dose independent rect. 1 2
301 229.40 atmosphere 995.0 270 > th dose independent rect. 1 2
302 229.40 atmosphere 1010.0 270 < th dose independent rect. 1 2
304 229.40 radiation 1.0 270 < th dose independent rect. 1 2
311 229.40 radiation 1.0 270 < th dose dependent rect. 1 2
317 229.41 wind 9.0 270 < th dose independent rect. 1 2
347 229.53 temperature 15.0 270 > th dose independent rect. 5 18
382 229.66 humidity 80.0 270 > th dose independent rect. 23 5
394 229.76 atmosphere 1015.0 1440 < th dose independent rect. 2 5
424 229.91 precipitation 0.1 30 < th dose independent rect. 1 5
425 229.91 precipitation 0.1 30 < th dose dependent rect. 1 5
429 229.94 wind 7.0 10 < th dose independent rect. 6 8
432 229.95 precipitation 0.1 10 < th dose independent rect. 6 19
433 229.95 precipitation 0.1 10 < th dose dependent rect. 6 19
434 229.95 atmosphere 995.0 10 > th dose dependent rect. 6 20
473 230.13 atmosphere 1010.0 270 < th dose independent rect. 23 6
475 230.14 wind 9.0 270 < th dose dependent rect. 23 6
481 230.17 wind 9.0 1440 < th dose independent rect. 2 5
482 230.17 temperature 10.0 1440 > th dose independent rect. 2 5
485 230.17 temperature 30.0 1440 < th dose independent rect. 2 5
489 230.17 humidity 50.0 1440 > th dose independent rect. 2 5
494 230.17 atmosphere 995.0 1440 > th dose independent rect. 2 5
495 230.17 radiation 40.0 1440 < th dose independent rect. 2 5
499 230.17 temperature 10.0 1440 > th dose independent rect. 7 19
547 230.43 temperature 15.0 90 > th dose independent rect. 5 9
587 230.57 temperature 20.0 10 > th dose independent rect. 6 8
596 230.67 wind 1.0 270 > th dose independent rect. 1 2
601 230.71 humidity 90.0 10 > th dose independent rect. 2 12
704 231.34 temperature 10.0 270 > th dose independent rect. 23 6
705 231.34 temperature 30.0 270 < th dose independent rect. 23 6
706 231.34 humidity 50.0 270 > th dose independent rect. 23 6
710 231.34 atmosphere 995.0 270 > th dose independent rect. 23 6
715 231.35 wind 5.0 270 < th dose independent rect. 23 6
716 231.35 wind 9.0 270 < th dose independent rect. 23 6
759 231.55 humidity 90.0 10 < th dose independent rect. 3 11
762 231.56 precipitation 0.1 270 < th dose independent rect. 3 21
763 231.56 precipitation 0.1 270 < th dose dependent rect. 3 21
773 231.64 precipitation 0.1 10 < th dose independent rect. 6 8
776 231.64 precipitation 0.1 10 < th dose dependent rect. 6 8
788 231.72 precipitation 0.1 90 < th dose independent rect. 5 9
789 231.72 precipitation 0.1 90 < th dose dependent rect. 5 9
791 231.73 humidity 90.0 10 > th dose independent rect. 2 10
841 232.00 temperature 15.0 270 > th dose independent rect. 4 7
844 232.03 wind 9.0 10 < th dose independent rect. 14 16
850 232.09 temperature 10.0 10 > th dose independent rect. 6 8
852 232.09 atmosphere 995.0 10 > th dose independent rect. 6 8
853 232.09 atmosphere 1015.0 10 < th dose independent rect. 6 8
854 232.09 temperature 10.0 10 > th dose independent rect. 14 16
860 232.15 atmosphere 1015.0 270 < th dose dependent rect. 1 2
869 232.23 radiation 40.0 10 < th dose independent rect. 14 16
918 232.44 wind 9.0 270 < th dose dependent rect. 3 21
921 232.47 radiation 40.0 90 < th dose independent rect. 13 16
933 232.53 radiation 30.0 270 < th dose independent rect. 15 9