BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0591600 Os05g0591600|Os05g0591600
(275 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0591600 Similar to Lysine decarboxylase-like protein 449 e-127
Os01g0588900 Conserved hypothetical protein 730 family protein 346 9e-96
Os02g0628000 274 4e-74
Os03g0109300 Similar to Lysine decarboxylase-like protein 269 2e-72
Os04g0518800 Similar to Lysine decarboxylase-like protein 268 3e-72
Os10g0479500 Similar to Lysine decarboxylase-like protein 263 1e-70
Os09g0547500 Similar to Lysine decarboxylase-like protein 238 5e-63
Os03g0857900 Similar to Lysine decarboxylase-like protein 236 2e-62
Os01g0708500 Conserved hypothetical protein 730 family protein 226 1e-59
Os05g0541200 Conserved hypothetical protein 730 family protein 226 2e-59
Os03g0697200 Similar to Lysine decarboxylase-like protein 207 6e-54
>Os05g0591600 Similar to Lysine decarboxylase-like protein
Length = 275
Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/253 (88%), Positives = 225/253 (88%)
Query: 23 VAMEPLSTATAPAAMXXXXXXXXXXXXXXXXXXXXXXICVYCGSAKGKKPSYQDAAVDLG 82
VAMEPLSTATAPAAM ICVYCGSAKGKKPSYQDAAVDLG
Sbjct: 23 VAMEPLSTATAPAAMEEESSSSGGGGGVGERRSRFRRICVYCGSAKGKKPSYQDAAVDLG 82
Query: 83 KELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGIIPKSLMPREVTGEPVGEVRAVSG 142
KELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGIIPKSLMPREVTGEPVGEVRAVSG
Sbjct: 83 KELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGIIPKSLMPREVTGEPVGEVRAVSG 142
Query: 143 MHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXXXXVITWAQLGIHKKPVGLLNVDG 202
MHERKAEMARFADAFIALPVIDPYPKMLGGYGT VITWAQLGIHKKPVGLLNVDG
Sbjct: 143 MHERKAEMARFADAFIALPVIDPYPKMLGGYGTLEELLEVITWAQLGIHKKPVGLLNVDG 202
Query: 203 FYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVMKLEDYVPEYSIGLVWEDQNQKQN 262
FYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVMKLEDYVPEYSIGLVWEDQNQKQN
Sbjct: 203 FYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVMKLEDYVPEYSIGLVWEDQNQKQN 262
Query: 263 NLVPELDSGITSS 275
NLVPELDSGITSS
Sbjct: 263 NLVPELDSGITSS 275
>Os01g0588900 Conserved hypothetical protein 730 family protein
Length = 242
Score = 346 bits (888), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 172/216 (79%), Positives = 189/216 (87%), Gaps = 11/216 (5%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
ICVYCGSAKG+K SYQDAAV+LGKELVERGIDLVYGGGSIGLMGLVSHAVH GGRHVIG+
Sbjct: 38 ICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVHDGGRHVIGV 97
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALP GGYGT
Sbjct: 98 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALP---------GGYGTLEEL 148
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
VITWAQLGIHKKPVGLLNVDGFY+P LSFID+AV+EGFI E+ARRIIISAPTA+ELV+
Sbjct: 149 LEVITWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVL 208
Query: 240 KLEDYVPEYSIGLVWEDQNQKQNNLVPELDSGITSS 275
KLE+YVPEY +GLVW+D Q ++ P+L++ ITSS
Sbjct: 209 KLEEYVPEYEVGLVWDD--QMPHSFAPDLETRITSS 242
>Os02g0628000
Length = 289
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/217 (64%), Positives = 161/217 (74%), Gaps = 14/217 (6%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
+CV+CGS+ GKK YQDAA++LGKELV R IDLVYGGGS+GLMGLVS AVH GGRHVIG+
Sbjct: 23 VCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSVGLMGLVSQAVHNGGRHVIGV 82
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IPK+LMPRE++GE VGEV+AVS MH+RKAEMAR +DAFIALP GGYGT
Sbjct: 83 IPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIALP---------GGYGTLEEL 133
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
VI WAQLGIH KPVGLLNVDG+YNPLLSFID AV EGFI AR II+ APT KEL+
Sbjct: 134 LEVIAWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHIIVLAPTPKELIE 193
Query: 240 KLEDYVPEYS---IGLVWEDQNQK--QNNLVPELDSG 271
KLE+Y P++ + WE + QN +P G
Sbjct: 194 KLEEYSPQHEKVVSKMKWEMEQMSYPQNYDIPRPKEG 230
>Os03g0109300 Similar to Lysine decarboxylase-like protein
Length = 211
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/198 (69%), Positives = 157/198 (79%), Gaps = 12/198 (6%)
Query: 61 CVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGII 120
CV+CGS++G K +Y+DAAVDL KELV RGIDLVYGGGSIGLMGLVS AV+ GGRHVIG+I
Sbjct: 17 CVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVI 76
Query: 121 PKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXXX 180
PK+LM E+ GE VGEVR VS MH+RKAEMAR +DAFIALP GGYGT
Sbjct: 77 PKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALP---------GGYGTLEELL 127
Query: 181 XVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVMK 240
VITWAQLGIH KPVGLLNVDG+YN LL+FID AV EGFI+ ARRII+SAPTA+EL+ K
Sbjct: 128 EVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDK 187
Query: 241 LEDYVPEY---SIGLVWE 255
LE+YVP + + GL WE
Sbjct: 188 LEEYVPYHDRVASGLNWE 205
>Os04g0518800 Similar to Lysine decarboxylase-like protein
Length = 250
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/189 (70%), Positives = 151/189 (79%), Gaps = 9/189 (4%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
ICV+CGS++GKK SYQDAAV+LGKELV R IDLVYGGGS+GLMGLVS AV+ GGRHVIG+
Sbjct: 30 ICVFCGSSQGKKKSYQDAAVELGKELVARNIDLVYGGGSVGLMGLVSQAVYNGGRHVIGV 89
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IPK+LMPRE+TGE VGEV+AV+ MH+RKAEMAR +DAFIALP GGYGT
Sbjct: 90 IPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALP---------GGYGTLEEL 140
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
VI WAQLGIH KPVGLLNVDG+YN LLSFID AV E FI+ AR II+ APT KEL+
Sbjct: 141 LEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLE 200
Query: 240 KLEDYVPEY 248
KLE Y P +
Sbjct: 201 KLEAYSPRH 209
>Os10g0479500 Similar to Lysine decarboxylase-like protein
Length = 215
Score = 263 bits (671), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/199 (67%), Positives = 154/199 (77%), Gaps = 12/199 (6%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
ICV+CGS++GKK SY DAA++LG ELV R IDLVYGGGSIGLMGLVS AV GGRHVIG+
Sbjct: 20 ICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFDGGRHVIGV 79
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IPK+LM E++GE VGEVR V+ MH+RKAEMAR +DAFIALP GGYGT
Sbjct: 80 IPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIALP---------GGYGTLEEL 130
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
VITWAQLGIH KPVGLLNVDG+YN LL+FID AV EGFI ARRII+ APTA+EL+
Sbjct: 131 LEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVMAPTAEELMD 190
Query: 240 KLEDYVPEY---SIGLVWE 255
KLE+YVP + + L WE
Sbjct: 191 KLEEYVPYHDRVASKLNWE 209
>Os09g0547500 Similar to Lysine decarboxylase-like protein
Length = 227
Score = 238 bits (606), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 119/187 (63%), Positives = 141/187 (75%), Gaps = 9/187 (4%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
+CV+CGS+ GK+ SY+DAAV+LGKELV R +DLVYGGGS+GLMG V+ AV GG HVIG+
Sbjct: 49 VCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGGHVIGV 108
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IP +LM +EVTGE VGEVR V MHERKAEMAR +DAF+ALP GGYGT
Sbjct: 109 IPTTLMGKEVTGETVGEVREVGSMHERKAEMARRSDAFVALP---------GGYGTLEEV 159
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
VI WAQLGIH KPVGLLNVDG+Y+ LL+F+D AV +GFI R + +SAP A LV
Sbjct: 160 VEVIAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVH 219
Query: 240 KLEDYVP 246
KLE+YVP
Sbjct: 220 KLEEYVP 226
>Os03g0857900 Similar to Lysine decarboxylase-like protein
Length = 246
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 155/200 (77%), Gaps = 13/200 (6%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
+CV+CGS+ GKK SYQ AAV LG++LVERGIDLVYGGGS+GLMGLVS AVH GG HV+G+
Sbjct: 35 VCVFCGSSPGKKASYQVAAVQLGQQLVERGIDLVYGGGSVGLMGLVSRAVHGGGGHVVGV 94
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
+P ++PRE+ GE +GEVRAV MH+RKAEMAR +DAFIALP GGYGT
Sbjct: 95 VPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALP---------GGYGTLEEL 145
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
VITWAQL IH KPVGLLNVDG+Y+ LL+FID AV+EGF++ ARRII++APTA +L+
Sbjct: 146 LEVITWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLC 205
Query: 240 KLEDYVP----EYSIGLVWE 255
KLE+YVP ++ L WE
Sbjct: 206 KLEEYVPPPHDATALKLTWE 225
>Os01g0708500 Conserved hypothetical protein 730 family protein
Length = 223
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 138/190 (72%), Gaps = 9/190 (4%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
ICV+CGS G + + DAA+ LG+ELV RGI+LVYGGGS+GLMGL++ V GG V+G+
Sbjct: 21 ICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGCGVLGV 80
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IPK+LMP E++G VGEV+ VS MHERKAEMAR +DAFIALP GGYGT
Sbjct: 81 IPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALP---------GGYGTMEEL 131
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
+ITW+QLGIH KPVGLLNVDG+Y+PLL+ D EGFI + R+II+SAPTA EL+
Sbjct: 132 LEMITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLR 191
Query: 240 KLEDYVPEYS 249
K+E Y +
Sbjct: 192 KMEQYTRSHQ 201
>Os05g0541200 Conserved hypothetical protein 730 family protein
Length = 223
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/186 (59%), Positives = 134/186 (72%), Gaps = 9/186 (4%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
ICV+CGS G++ + DAA+DLG ELV RG+DLVYGGGSIGLMGL++ V GGR V+G+
Sbjct: 19 ICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGRRVVGV 78
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IP++LM E++GE VGEV V MHERKAEMAR + AFIALP GGYGT
Sbjct: 79 IPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALP---------GGYGTMEEL 129
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
+ITW QLGIH KPVGLLNVDG+Y+PLL+ D EGFI + R+I +SAPTA EL+
Sbjct: 130 LEMITWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLT 189
Query: 240 KLEDYV 245
K+E Y
Sbjct: 190 KMEQYT 195
>Os03g0697200 Similar to Lysine decarboxylase-like protein
Length = 230
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 132/182 (72%), Gaps = 9/182 (4%)
Query: 60 ICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHVIGI 119
ICV+CGS +G +PS+ AA+DLGK+LVER +DLVYGGGS GLMGLVS VH GGRHV+G+
Sbjct: 23 ICVFCGSRRGNRPSFSAAALDLGKQLVERELDLVYGGGSGGLMGLVSKTVHDGGRHVLGV 82
Query: 120 IPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTXXXX 179
IP +L+P EV+GE +GE + V MHERK+EMA+ ADAFIALP GGYGT
Sbjct: 83 IPSALLPEEVSGETLGEAKVVRDMHERKSEMAKHADAFIALP---------GGYGTIEEL 133
Query: 180 XXVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKELVM 239
+I WAQLGIH KPVGLLNVDG+YN LLS D V EGFI AR I + A A EL+
Sbjct: 134 LEIIAWAQLGIHNKPVGLLNVDGYYNNLLSLFDKGVEEGFIDAAARNIFVLADNAGELLT 193
Query: 240 KL 241
KL
Sbjct: 194 KL 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,213,789
Number of extensions: 348339
Number of successful extensions: 696
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 11
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)