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Os03g0109300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lysine decarboxylase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0561) R2 : 0.327
β1 : -2.05 (0.316) R2dD : 0.221 R2D : -0.185
β2 : 0.527 (0.113) R2dC : 0.0341 R2C : 0.0159
β3 : 1.95 (0.162) R2dE : 0.32 R2E : 0.117
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.46 (1.01) R2dD*E : 0.222 R2D*E : -0.149
γ1 : 0.229 (0.119) R2dN8 : 0.0121 R2N8 : 0.0424
σ : 0.866
deviance : 345.54
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C
peak time of C : 10
E
wheather : temperature
threshold : 23.49
memory length : 1258
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 4.98

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.65 0.861 10.9 -2 0.535 1.9 1.66 -6.2 0.277 9.88 23.79 1250 14.2 4.92
372.18 0.899 10.8 -0.665 0.609 1.82 1.77 -- 0.457 9.49 18.38 2668 14.6 4.9
345.54 0.866 11 -2.05 0.527 1.95 -- -6.46 0.229 10 23.49 1258 14 4.98
378.12 0.906 10.8 -0.494 0.639 1.42 -- -- 0.521 10.7 20.58 1254 14.2 3.1
361.83 0.886 11 -1.98 -- 1.86 -- -6.37 0.251 -- 23.44 1270 14.3 4.71
435.25 0.978 10.7 0.0158 0.511 -- 1.92 -- 0.803 8.61 -- -- -- --
446.15 0.989 10.7 0.0715 0.538 -- -- -- 0.799 7.6 -- -- -- --
382.65 0.911 10.8 -0.319 -- 1.42 -- -- 0.553 -- 22.17 1179 16.4 1.98
369.97 0.896 10.8 -- 0.633 1.45 -- -- 0.616 11.4 20.99 1162 16 2.49
461.69 1 10.7 0.0791 -- -- -- -- 0.807 -- -- -- -- --
446.28 0.988 10.7 -- 0.539 -- -- -- 0.791 7.59 -- -- -- --
384.18 0.913 10.8 -- -- 1.31 -- -- 0.705 -- 22.78 1182 16.3 2.48
461.86 1 10.7 -- -- -- -- -- 0.799 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 352.40 temperature 25 1440 > th dose dependent rect. 14 6
14 353.46 temperature 25 1440 > th dose dependent rect. 14 18
45 354.85 temperature 25 1440 > th dose dependent sin 17 NA
113 356.71 radiation 1 14400 < th dose dependent rect. 2 3
117 356.81 temperature 25 1440 > th dose dependent rect. 6 16
205 357.70 temperature 25 1440 > th dose dependent no NA NA
216 357.84 wind 5 43200 < th dose dependent rect. 20 2
246 358.37 temperature 25 1440 > th dose dependent rect. 18 23
283 359.60 humidity 90 720 < th dose dependent rect. 16 4
286 359.71 wind 5 43200 < th dose independent rect. 11 4
294 359.84 wind 5 43200 > th dose dependent rect. 14 2
300 359.99 radiation 20 43200 < th dose independent rect. 7 1
305 360.10 humidity 80 720 < th dose dependent rect. 16 12
311 360.19 radiation 20 43200 < th dose independent rect. 18 15
312 360.20 radiation 20 43200 < th dose independent rect. 4 5
316 360.21 radiation 20 43200 < th dose independent rect. 6 3
339 360.58 wind 5 43200 > th dose independent rect. 11 4
344 360.74 wind 3 43200 > th dose dependent rect. 11 4
369 361.13 wind 3 43200 < th dose independent rect. 21 1
375 361.39 wind 3 43200 > th dose independent rect. 20 2
412 362.07 wind 5 43200 > th dose independent rect. 10 7
430 362.34 wind 3 14400 > th dose dependent rect. 11 1
439 362.56 humidity 50 720 > th dose dependent rect. 17 6
451 362.72 temperature 25 1440 < th dose independent rect. 14 9
471 363.02 radiation 20 43200 < th dose independent sin 11 NA
472 363.02 radiation 10 43200 > th dose dependent rect. 6 2
493 363.15 humidity 90 43200 > th dose dependent rect. 22 2
497 363.26 temperature 25 1440 > th dose independent rect. 14 9
502 363.32 wind 1 43200 < th dose dependent rect. 23 3
506 363.38 wind 5 14400 < th dose independent rect. 11 1
509 363.45 temperature 25 4320 > th dose independent rect. 10 1
580 363.83 radiation 1 14400 < th dose dependent rect. 21 8
581 363.84 radiation 30 14400 < th dose independent rect. 16 1
585 363.91 humidity 90 43200 > th dose independent rect. 22 2
603 364.00 radiation 40 43200 < th dose dependent rect. 6 1
623 364.12 temperature 25 4320 < th dose independent rect. 7 6
640 364.23 wind 5 14400 > th dose independent rect. 11 1
643 364.24 radiation 20 43200 > th dose independent rect. 6 2
680 364.43 radiation 40 43200 < th dose independent rect. 18 17
685 364.45 radiation 40 43200 < th dose independent rect. 4 7
687 364.45 radiation 40 43200 < th dose independent rect. 1 10
690 364.46 radiation 40 43200 < th dose independent rect. 7 4
695 364.47 temperature 25 4320 < th dose independent rect. 5 8
701 364.47 radiation 40 43200 < th dose dependent rect. 19 12
711 364.51 radiation 30 14400 < th dose independent rect. 16 8
716 364.52 radiation 40 43200 < th dose dependent rect. 1 6
744 364.58 radiation 30 14400 < th dose independent rect. 16 12
754 364.61 radiation 40 43200 < th dose independent sin 8 NA
794 364.69 radiation 40 43200 < th dose independent rect. 13 22
818 364.76 temperature 25 4320 < th dose independent rect. 10 1
822 364.77 radiation 40 43200 < th dose independent rect. 9 2
832 364.79 radiation 40 43200 < th dose independent rect. 9 23
837 364.82 radiation 40 43200 < th dose independent rect. 15 23
858 364.86 humidity 60 43200 < th dose independent rect. 11 1
882 364.90 radiation 40 43200 < th dose independent rect. 6 15
899 364.91 radiation 40 43200 < th dose independent no NA NA
900 364.91 radiation 40 43200 < th dose independent rect. 7 13
934 364.91 radiation 40 43200 < th dose independent rect. 7 22
935 364.91 radiation 40 43200 < th dose independent rect. 18 22
950 364.92 radiation 40 43200 < th dose independent rect. 7 9
979 364.92 radiation 40 43200 < th dose independent rect. 20 20