BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0109300 Os03g0109300|AK099538
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0109300 Similar to Lysine decarboxylase-like protein 418 e-117
Os10g0479500 Similar to Lysine decarboxylase-like protein 377 e-105
Os04g0518800 Similar to Lysine decarboxylase-like protein 333 7e-92
Os02g0628000 330 5e-91
Os01g0588900 Conserved hypothetical protein 730 family protein 297 4e-81
Os05g0591600 Similar to Lysine decarboxylase-like protein 288 2e-78
Os09g0547500 Similar to Lysine decarboxylase-like protein 279 1e-75
Os03g0857900 Similar to Lysine decarboxylase-like protein 278 2e-75
Os01g0708500 Conserved hypothetical protein 730 family protein 277 3e-75
Os05g0541200 Conserved hypothetical protein 730 family protein 270 5e-73
Os03g0697200 Similar to Lysine decarboxylase-like protein 227 4e-60
>Os03g0109300 Similar to Lysine decarboxylase-like protein
Length = 211
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/211 (96%), Positives = 204/211 (96%)
Query: 1 MRXXXXXXXESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGL 60
MR ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGL
Sbjct: 1 MRQQQQQQQESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGL 60
Query: 61 VSQAVYDGGRHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGY 120
VSQAVYDGGRHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGY
Sbjct: 61 VSQAVYDGGRHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGY 120
Query: 121 GTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPT 180
GTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPT
Sbjct: 121 GTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPT 180
Query: 181 AQELMDKLEEYVPYHDRVASGLNWETGHLGF 211
AQELMDKLEEYVPYHDRVASGLNWETGHLGF
Sbjct: 181 AQELMDKLEEYVPYHDRVASGLNWETGHLGF 211
>Os10g0479500 Similar to Lysine decarboxylase-like protein
Length = 215
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/202 (89%), Positives = 190/202 (94%)
Query: 10 ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGG 69
+SRFKR CVFCGSSQG K +Y DAA++L ELVAR IDLVYGGGSIGLMGLVSQAV+DGG
Sbjct: 14 QSRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFDGG 73
Query: 70 RHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 129
RHVIGVIPKTLMTPEI GETVGEVRPV+DMHQRKAEMARQSDAFIALPGGYGTLEELLEV
Sbjct: 74 RHVIGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 133
Query: 130 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLE 189
ITWAQLGIHHKPVGLLNVDGYYNSLLTFID+AVEEGFI+ SARRIIV APTA+ELMDKLE
Sbjct: 134 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVMAPTAEELMDKLE 193
Query: 190 EYVPYHDRVASGLNWETGHLGF 211
EYVPYHDRVAS LNWE GHLG+
Sbjct: 194 EYVPYHDRVASKLNWEMGHLGY 215
>Os04g0518800 Similar to Lysine decarboxylase-like protein
Length = 250
Score = 333 bits (853), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 158/202 (78%), Positives = 176/202 (87%)
Query: 10 ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGG 69
+SRF+R CVFCGSSQG K +Y+DAAV+L KELVAR IDLVYGGGS+GLMGLVSQAVY+GG
Sbjct: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDLVYGGGSVGLMGLVSQAVYNGG 83
Query: 70 RHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 129
RHVIGVIPKTLM EI GETVGEV+ V+DMHQRKAEMARQSDAFIALPGGYGTLEELLEV
Sbjct: 84 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 143
Query: 130 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLE 189
I WAQLGIH KPVGLLNVDGYYNSLL+FID+AVEE FISPSAR IIV APT +EL++KLE
Sbjct: 144 IAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLE 203
Query: 190 EYVPYHDRVASGLNWETGHLGF 211
Y P HD+V + WE + +
Sbjct: 204 AYSPRHDKVVPKMQWEMEKMSY 225
>Os02g0628000
Length = 289
Score = 330 bits (846), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 175/202 (86%)
Query: 10 ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGG 69
+SRF+R CVFCGSS G K Y+DAA++L KELVAR IDLVYGGGS+GLMGLVSQAV++GG
Sbjct: 17 QSRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSVGLMGLVSQAVHNGG 76
Query: 70 RHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 129
RHVIGVIPKTLM EI GETVGEV+ VSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV
Sbjct: 77 RHVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 136
Query: 130 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLE 189
I WAQLGIH KPVGLLNVDGYYN LL+FID+AVEEGFI PSAR IIV APT +EL++KLE
Sbjct: 137 IAWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHIIVLAPTPKELIEKLE 196
Query: 190 EYVPYHDRVASGLNWETGHLGF 211
EY P H++V S + WE + +
Sbjct: 197 EYSPQHEKVVSKMKWEMEQMSY 218
>Os01g0588900 Conserved hypothetical protein 730 family protein
Length = 242
Score = 297 bits (760), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/195 (74%), Positives = 168/195 (86%), Gaps = 3/195 (1%)
Query: 11 SRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGR 70
SRF+R CV+CGS++G K +Y+DAAV+L KELV RGIDLVYGGGSIGLMGLVS AV+DGGR
Sbjct: 33 SRFRRICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVHDGGR 92
Query: 71 HVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 130
HVIGVIPK+LM E+ GE VGEVR VS MH+RKAEMAR +DAFIALPGGYGTLEELLEVI
Sbjct: 93 HVIGVIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPGGYGTLEELLEVI 152
Query: 131 TWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEE 190
TWAQLGIH KPVGLLNVDG+Y+ L+FID AV EGFI+ ARRII+SAPTA+EL+ KLEE
Sbjct: 153 TWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVLKLEE 212
Query: 191 YVPYHDRVASGLNWE 205
YVP ++ GL W+
Sbjct: 213 YVPEYE---VGLVWD 224
>Os05g0591600 Similar to Lysine decarboxylase-like protein
Length = 275
Score = 288 bits (737), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/202 (71%), Positives = 166/202 (82%), Gaps = 12/202 (5%)
Query: 13 FKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGRHV 72
F+R CV+CGS++G K +Y+DAAVDL KELV RGIDLVYGGGSIGLMGLVS AV+ GGRHV
Sbjct: 57 FRRICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHV 116
Query: 73 IGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALP---------GGYGTL 123
IG+IPK+LM E+ GE VGEVR VS MH+RKAEMAR +DAFIALP GGYGTL
Sbjct: 117 IGIIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTL 176
Query: 124 EELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQE 183
EELLEVITWAQLGIH KPVGLLNVDG+YN LL+FID AV EGFI+ ARRII+SAPTA+E
Sbjct: 177 EELLEVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKE 236
Query: 184 LMDKLEEYVPYHDRVASGLNWE 205
L+ KLE+YVP + + GL WE
Sbjct: 237 LVMKLEDYVPEY---SIGLVWE 255
>Os09g0547500 Similar to Lysine decarboxylase-like protein
Length = 227
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 133/184 (72%), Positives = 155/184 (84%)
Query: 10 ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGG 69
+SRF+R CVFCGSS G + +YRDAAV+L KELVAR +DLVYGGGS+GLMG V++AV +GG
Sbjct: 43 QSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGG 102
Query: 70 RHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 129
HVIGVIP TLM E+ GETVGEVR V MH+RKAEMAR+SDAF+ALPGGYGTLEE++EV
Sbjct: 103 GHVIGVIPTTLMGKEVTGETVGEVREVGSMHERKAEMARRSDAFVALPGGYGTLEEVVEV 162
Query: 130 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLE 189
I WAQLGIH KPVGLLNVDGYY+ LL F+D+AV +GFI PS R + VSAP A L+ KLE
Sbjct: 163 IAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLE 222
Query: 190 EYVP 193
EYVP
Sbjct: 223 EYVP 226
>Os03g0857900 Similar to Lysine decarboxylase-like protein
Length = 246
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/196 (73%), Positives = 166/196 (84%), Gaps = 1/196 (0%)
Query: 11 SRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGR 70
SRF+R CVFCGSS G K +Y+ AAV L ++LV RGIDLVYGGGS+GLMGLVS+AV+ GG
Sbjct: 30 SRFRRVCVFCGSSPGKKASYQVAAVQLGQQLVERGIDLVYGGGSVGLMGLVSRAVHGGGG 89
Query: 71 HVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 130
HV+GV+P ++ E+IGET+GEVR V MHQRKAEMAR+SDAFIALPGGYGTLEELLEVI
Sbjct: 90 HVVGVVPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
Query: 131 TWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEE 190
TWAQL IHHKPVGLLNVDGYY+SLL FID+AV EGF+SP ARRIIV+APTA +L+ KLEE
Sbjct: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
Query: 191 YV-PYHDRVASGLNWE 205
YV P HD A L WE
Sbjct: 210 YVPPPHDATALKLTWE 225
>Os01g0708500 Conserved hypothetical protein 730 family protein
Length = 223
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 132/200 (66%), Positives = 157/200 (78%)
Query: 12 RFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGRH 71
RF R CVFCGS+ GN+ + DAA+ L +ELV+RGI+LVYGGGS+GLMGL++Q V DGG
Sbjct: 17 RFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGCG 76
Query: 72 VIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVIT 131
V+GVIPK LM EI G +VGEV+ VSDMH+RKAEMARQSDAFIALPGGYGT+EELLE+IT
Sbjct: 77 VLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEMIT 136
Query: 132 WAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEEY 191
W+QLGIH KPVGLLNVDGYY+ LL D+ EGFI R+IIVSAPTA EL+ K+E+Y
Sbjct: 137 WSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKMEQY 196
Query: 192 VPYHDRVASGLNWETGHLGF 211
H VA +WE LG+
Sbjct: 197 TRSHQEVAPRTSWEMSELGY 216
>Os05g0541200 Conserved hypothetical protein 730 family protein
Length = 223
Score = 270 bits (690), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 129/201 (64%), Positives = 153/201 (76%)
Query: 11 SRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGR 70
SRF CVFCGS+ G + + DAA+DL ELV RG+DLVYGGGSIGLMGL+++ V DGGR
Sbjct: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
Query: 71 HVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 130
V+GVIP+ LM EI GE+VGEV V DMH+RKAEMAR+S AFIALPGGYGT+EELLE+I
Sbjct: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
Query: 131 TWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEE 190
TW QLGIH KPVGLLNVDGYY+ LL D+ EGFI+ R+I VSAPTA EL+ K+E+
Sbjct: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
Query: 191 YVPYHDRVASGLNWETGHLGF 211
Y H VA +WE LG+
Sbjct: 194 YTRLHQEVAPATSWEISELGY 214
>Os03g0697200 Similar to Lysine decarboxylase-like protein
Length = 230
Score = 227 bits (579), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 116/177 (65%), Positives = 143/177 (80%)
Query: 14 KRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGRHVI 73
+ CVFCGS +GN+ ++ AA+DL K+LV R +DLVYGGGS GLMGLVS+ V+DGGRHV+
Sbjct: 21 RTICVFCGSRRGNRPSFSAAALDLGKQLVERELDLVYGGGSGGLMGLVSKTVHDGGRHVL 80
Query: 74 GVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVITWA 133
GVIP L+ E+ GET+GE + V DMH+RK+EMA+ +DAFIALPGGYGT+EELLE+I WA
Sbjct: 81 GVIPSALLPEEVSGETLGEAKVVRDMHERKSEMAKHADAFIALPGGYGTIEELLEIIAWA 140
Query: 134 QLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEE 190
QLGIH+KPVGLLNVDGYYN+LL+ D+ VEEGFI +AR I V A A EL+ KL E
Sbjct: 141 QLGIHNKPVGLLNVDGYYNNLLSLFDKGVEEGFIDAAARNIFVLADNAGELLTKLTE 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,447,626
Number of extensions: 322253
Number of successful extensions: 698
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 11
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)