Os10g0479500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lysine decarboxylase-like protein.
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Os10g0479500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lysine decarboxylase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.13 | 0.716 | 7.51 | -1.37 | 1.58 | 1.21 | -1.35 | 4.36 | -0.501 | 19.8 | 49.24 | 7 | -- | -- |
| 277.65 | 0.782 | 7.52 | -1.45 | 1.71 | 0.772 | 1.54 | -- | -0.521 | 20.8 | 49.24 | 7 | -- | -- |
| 236.44 | 0.722 | 7.52 | -1.37 | 1.63 | 1.01 | -- | 3.9 | -0.511 | 20.1 | 49.24 | 7 | -- | -- |
| 278.78 | 0.778 | 7.51 | -1.49 | 1.56 | 1.15 | -- | -- | -0.517 | 19.8 | 42.05 | 7 | -- | -- |
| 350.64 | 0.872 | 7.49 | -1.35 | -- | 1.66 | -- | 3.31 | -0.553 | -- | 36.96 | 7 | -- | -- |
| 289.16 | 0.797 | 7.53 | -1.46 | 2.05 | -- | 1.98 | -- | -0.524 | 21.5 | -- | -- | -- | -- |
| 302.6 | 0.815 | 7.53 | -1.53 | 2.06 | -- | -- | -- | -0.524 | 21.3 | -- | -- | -- | -- |
| 375.38 | 0.902 | 7.47 | -1.54 | -- | 1.4 | -- | -- | -0.533 | -- | 15.93 | 7 | -- | -- |
| 336.98 | 0.855 | 7.48 | -- | 1.55 | 1.21 | -- | -- | -0.353 | 19.6 | 41.57 | 6 | -- | -- |
| 548.5 | 1.09 | 7.47 | -1.52 | -- | -- | -- | -- | -0.533 | -- | -- | -- | -- | -- |
| 363.97 | 0.892 | 7.49 | -- | 2.06 | -- | -- | -- | -0.354 | 21.2 | -- | -- | -- | -- |
| 436.27 | 0.973 | 7.44 | -- | -- | 1.4 | -- | -- | -0.37 | -- | 16.56 | 5 | -- | -- |
| 609.25 | 1.15 | 7.44 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.74 | radiation | 40.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 4 | 220.83 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 6 | 221.05 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 9 | 221.78 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 10 |
| 20 | 223.67 | radiation | 1.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 23 | 223.86 | humidity | 70.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 24 | 223.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 43 | 225.74 | radiation | 1.0 | 270 | < th | dose independent | sin | 6 | NA |
| 51 | 226.35 | humidity | 90.0 | 10 | < th | dose independent | sin | 3 | NA |
| 54 | 226.60 | humidity | 90.0 | 10 | > th | dose independent | rect. | 3 | 9 |
| 68 | 226.93 | radiation | 10.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 74 | 227.15 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 3 | 10 |
| 76 | 227.28 | radiation | 1.0 | 270 | > th | dose independent | sin | 7 | NA |
| 83 | 227.61 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 8 |
| 118 | 227.97 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 13 |
| 120 | 228.03 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 11 |
| 127 | 228.19 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 162 | 228.46 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 163 | 228.48 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 13 |
| 168 | 228.58 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 11 |
| 184 | 228.83 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 199 | 228.90 | humidity | 90.0 | 10 | > th | dose independent | sin | 3 | NA |
| 238 | 229.51 | humidity | 90.0 | 10 | > th | dose independent | rect. | 3 | 7 |
| 263 | 229.81 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 278 | 229.87 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 293 | 230.08 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 24 | 13 |
| 296 | 230.11 | radiation | 1.0 | 90 | > th | dose independent | sin | 4 | NA |
| 303 | 230.20 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 438 | 231.13 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 475 | 231.43 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 480 | 231.49 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 7 |
| 517 | 231.88 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 16 |
| 519 | 231.89 | temperature | 15.0 | 90 | > th | dose independent | rect. | 6 | 7 |
| 532 | 232.01 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 533 | 232.02 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 545 | 232.09 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 599 | 232.47 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 609 | 232.59 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 7 |
| 623 | 232.66 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 630 | 232.74 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 647 | 232.82 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 657 | 232.88 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 17 |
| 728 | 233.48 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 729 | 233.49 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 7 |
| 730 | 233.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 8 |
| 731 | 233.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 759 | 233.68 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 826 | 233.98 | temperature | 15.0 | 270 | > th | dose dependent | sin | 21 | NA |
| 839 | 234.06 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 8 |
| 841 | 234.06 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 847 | 234.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 848 | 234.08 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 849 | 234.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 868 | 234.23 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 889 | 234.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 945 | 234.54 | radiation | 40.0 | 10 | < th | dose dependent | no | NA | NA |
| 955 | 234.58 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 968 | 234.60 | radiation | 1.0 | 10 | > th | dose dependent | no | NA | NA |