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Os05g0541200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein 730 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.027) R2 : 0.683
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.0807) R2dC : 0.348 R2C : 0.543
β3 : 0.95 (0.0838) R2dE : 0.118 R2E : 0.288
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.349 (0.0574) R2dN8 : 0.0345 R2N8 : 0.0152
σ : 0.507
deviance : 118.45
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_____
C
peak time of C : 7.29
E
wheather : temperature
threshold : 28.47
memory length : 333
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.47 0.483 12 -0.0208 1.58 0.794 1.28 1.98 0.312 7.24 28.3 315 -- --
111.58 0.492 12 -0.0208 1.58 0.794 1.87 -- 0.312 7.24 28.3 315 -- --
109.52 0.487 12 -0.0208 1.58 0.794 -- 2.58 0.312 7.24 28.3 315 -- --
115.71 0.501 12 0.307 1.55 0.952 -- -- 0.391 7.35 28.2 301 -- --
186.24 0.636 12 0.141 -- 1.76 -- 2.57 0.436 -- 27.79 450 -- --
131.31 0.537 12 0.0928 2.05 -- 2.23 -- 0.275 6.62 -- -- -- --
143.79 0.562 12 0.128 2.06 -- -- -- 0.269 6.67 -- -- -- --
194.28 0.649 11.9 0.438 -- 1.75 -- -- 0.461 -- 27.71 443 -- --
118.45 0.507 12 -- 1.56 0.95 -- -- 0.349 7.29 28.47 333 -- --
365.57 0.893 12 0.176 -- -- -- -- 0.31 -- -- -- -- --
144.21 0.562 12 -- 2.06 -- -- -- 0.254 6.67 -- -- -- --
195.26 0.651 12 -- -- 1.94 -- -- 0.502 -- 28.22 462 -- --
366.38 0.893 12 -- -- -- -- -- 0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.14 temperature 30.0 270 < th dose independent rect. 17 21
8 105.55 temperature 30.0 270 < th dose independent rect. 5 9
15 106.77 atmosphere 1000.0 270 > th dose independent rect. 8 15
16 106.94 temperature 30.0 270 < th dose independent rect. 8 15
20 107.22 radiation 40.0 270 < th dose independent rect. 18 20
22 107.37 radiation 40.0 270 < th dose independent rect. 17 22
36 108.23 humidity 80.0 14400 < th dose dependent rect. 18 17
42 108.42 humidity 70.0 14400 > th dose independent rect. 9 1
43 108.43 humidity 70.0 14400 < th dose independent rect. 9 1
45 108.52 temperature 20.0 720 > th dose dependent rect. 8 1
49 108.75 humidity 80.0 14400 > th dose independent rect. 20 1
53 108.81 humidity 80.0 14400 < th dose dependent sin 10 NA
54 108.82 radiation 20.0 270 < th dose independent sin 13 NA
58 108.90 atmosphere 1000.0 10 > th dose independent rect. 20 20
66 109.15 humidity 50.0 14400 < th dose independent rect. 16 19
83 109.52 radiation 10.0 14400 > th dose independent rect. 17 15
88 109.58 humidity 60.0 14400 < th dose independent rect. 12 1
98 109.67 temperature 30.0 270 < th dose independent rect. 4 21
101 109.68 temperature 20.0 720 > th dose dependent rect. 7 4
102 109.69 humidity 50.0 14400 > th dose independent rect. 16 18
103 109.70 humidity 60.0 14400 > th dose independent rect. 12 1
105 109.70 radiation 40.0 270 < th dose independent rect. 9 14
130 110.03 radiation 40.0 270 < th dose dependent sin 13 NA
132 110.05 radiation 20.0 270 > th dose independent sin 13 NA
133 110.06 humidity 60.0 14400 > th dose independent rect. 11 3
134 110.06 radiation 10.0 270 > th dose dependent sin 13 NA
135 110.07 humidity 70.0 14400 > th dose independent rect. 18 17
137 110.09 temperature 25.0 720 > th dose dependent rect. 1 10
145 110.17 radiation 40.0 14400 > th dose dependent rect. 12 1
160 110.25 humidity 70.0 14400 > th dose independent rect. 24 11
166 110.27 humidity 50.0 14400 > th dose independent rect. 15 11
169 110.28 humidity 50.0 14400 > th dose independent rect. 15 13
171 110.29 humidity 70.0 14400 < th dose independent rect. 19 16
177 110.30 humidity 80.0 14400 < th dose dependent rect. 19 1
185 110.34 humidity 80.0 14400 < th dose dependent rect. 17 13
186 110.35 atmosphere 1000.0 10 > th dose independent rect. 11 14
189 110.35 humidity 80.0 14400 < th dose dependent rect. 9 2
193 110.36 humidity 50.0 14400 > th dose independent rect. 15 3
203 110.39 humidity 80.0 14400 < th dose dependent rect. 18 9
214 110.42 temperature 25.0 270 > th dose dependent rect. 1 18
223 110.48 radiation 40.0 4320 < th dose independent rect. 13 1
225 110.48 radiation 40.0 270 < th dose dependent rect. 9 15
230 110.50 temperature 25.0 270 > th dose dependent rect. 6 13
242 110.54 atmosphere 995.0 10 > th dose dependent rect. 20 20
243 110.55 temperature 30.0 720 > th dose independent sin 7 NA
244 110.55 radiation 10.0 14400 > th dose independent rect. 6 2
246 110.56 humidity 70.0 14400 < th dose independent sin 7 NA
250 110.57 humidity 70.0 270 > th dose independent rect. 9 14
309 110.63 humidity 50.0 14400 < th dose dependent rect. 16 18
322 110.66 humidity 50.0 14400 < th dose dependent rect. 16 1
341 110.71 temperature 30.0 720 > th dose independent rect. 8 3
384 110.80 radiation 40.0 270 < th dose dependent rect. 18 19
385 110.80 atmosphere 995.0 90 > th dose dependent rect. 19 20
390 110.82 temperature 10.0 270 > th dose dependent rect. 1 17
438 110.91 radiation 20.0 14400 < th dose dependent rect. 6 1
441 110.93 humidity 70.0 14400 > th dose independent sin 8 NA
471 111.02 temperature 10.0 270 > th dose dependent rect. 3 15
478 111.05 temperature 15.0 270 > th dose dependent rect. 6 12
480 111.06 radiation 40.0 14400 > th dose independent rect. 13 1
514 111.11 precipitation 0.1 43200 < th dose independent rect. 17 2
516 111.11 precipitation 0.1 43200 < th dose dependent rect. 17 2
541 111.12 radiation 20.0 14400 < th dose dependent rect. 17 14
583 111.17 temperature 30.0 270 > th dose independent rect. 15 22
598 111.18 radiation 1.0 14400 > th dose dependent rect. 17 14
612 111.22 temperature 25.0 270 > th dose dependent sin 23 NA
624 111.26 radiation 1.0 14400 > th dose dependent rect. 6 1
627 111.26 radiation 20.0 14400 < th dose dependent rect. 21 10
632 111.27 radiation 40.0 4320 < th dose independent rect. 13 13
651 111.29 radiation 40.0 4320 < th dose independent rect. 13 15
657 111.30 temperature 25.0 720 > th dose dependent sin 6 NA
679 111.33 radiation 20.0 14400 < th dose dependent rect. 3 4
681 111.33 radiation 40.0 14400 < th dose dependent rect. 21 10
704 111.37 radiation 20.0 270 > th dose independent rect. 14 18
712 111.38 humidity 50.0 14400 < th dose independent rect. 16 2
775 111.46 precipitation 0.1 43200 > th dose independent rect. 17 2
823 111.52 humidity 80.0 14400 < th dose independent rect. 19 3
869 111.58 temperature 25.0 270 > th dose dependent rect. 12 23
872 111.61 atmosphere 1000.0 270 > th dose independent rect. 17 21
904 111.67 temperature 25.0 270 > th dose dependent no NA NA
905 111.67 temperature 25.0 270 > th dose dependent rect. 6 22
906 111.67 temperature 25.0 270 > th dose dependent rect. 4 23
920 111.69 radiation 30.0 14400 < th dose independent rect. 8 1
921 111.69 radiation 30.0 14400 < th dose independent rect. 21 12
976 111.79 radiation 40.0 270 < th dose independent rect. 5 9
978 111.79 radiation 40.0 4320 > th dose independent rect. 13 19