BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0541200 Os05g0541200|AK068633
(223 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0541200 Conserved hypothetical protein 730 family protein 429 e-121
Os01g0708500 Conserved hypothetical protein 730 family protein 351 2e-97
Os10g0479500 Similar to Lysine decarboxylase-like protein 282 2e-76
Os02g0628000 278 2e-75
Os04g0518800 Similar to Lysine decarboxylase-like protein 271 3e-73
Os03g0109300 Similar to Lysine decarboxylase-like protein 270 6e-73
Os01g0588900 Conserved hypothetical protein 730 family protein 253 7e-68
Os09g0547500 Similar to Lysine decarboxylase-like protein 242 1e-64
Os05g0591600 Similar to Lysine decarboxylase-like protein 239 1e-63
Os03g0857900 Similar to Lysine decarboxylase-like protein 228 3e-60
Os03g0697200 Similar to Lysine decarboxylase-like protein 226 8e-60
>Os05g0541200 Conserved hypothetical protein 730 family protein
Length = 223
Score = 429 bits (1102), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR
Sbjct: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI
Sbjct: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ
Sbjct: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
Query: 194 YTRLHQEVAPATSWEISELGYGRTPGADQS 223
YTRLHQEVAPATSWEISELGYGRTPGADQS
Sbjct: 194 YTRLHQEVAPATSWEISELGYGRTPGADQS 223
>Os01g0708500 Conserved hypothetical protein 730 family protein
Length = 223
Score = 351 bits (901), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/204 (83%), Positives = 182/204 (89%)
Query: 15 RFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGRR 74
RFG ICVFCGSNAG R VFGDAAL LG ELV RG++LVYGGGS+GLMGLIA+TVLDGG
Sbjct: 17 RFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGCG 76
Query: 75 VVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMIT 134
V+GVIP+ALM EISG SVGEV +V DMHERKAEMAR+S AFIALPGGYGTMEELLEMIT
Sbjct: 77 VLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEMIT 136
Query: 135 WCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQY 194
W QLGIHDKPVGLLNVDGYYDPLLALFDKG AEGFI +DCRQI VSAPTA ELL KMEQY
Sbjct: 137 WSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKMEQY 196
Query: 195 TRLHQEVAPATSWEISELGYGRTP 218
TR HQEVAP TSWE+SELGYG+TP
Sbjct: 197 TRSHQEVAPRTSWEMSELGYGKTP 220
>Os10g0479500 Similar to Lysine decarboxylase-like protein
Length = 215
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 133/201 (66%), Positives = 159/201 (79%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRF ICVFCGS+ G++R + DAA++LG+ELV R +DLVYGGGSIGLMGL+++ V DGGR
Sbjct: 15 SRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFDGGR 74
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
V+GVIP+ LM EISGE+VGEV V DMH+RKAEMAR+S AFIALPGGYGT+EELLE+I
Sbjct: 75 HVIGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 134
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
TW QLGIH KPVGLLNVDGYY+ LL DK EGFIN+ R+I V APTA EL+ K+E+
Sbjct: 135 TWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVMAPTAEELMDKLEE 194
Query: 194 YTRLHQEVAPATSWEISELGY 214
Y H VA +WE+ LGY
Sbjct: 195 YVPYHDRVASKLNWEMGHLGY 215
>Os02g0628000
Length = 289
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 125/204 (61%), Positives = 159/204 (77%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRF +CVFCGS+ G+++++ DAA++LG ELV R +DLVYGGGS+GLMGL+++ V +GGR
Sbjct: 18 SRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSVGLMGLVSQAVHNGGR 77
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
V+GVIP+ LM EISGE+VGEV V DMH+RKAEMAR+S AFIALPGGYGT+EELLE+I
Sbjct: 78 HVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 137
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
W QLGIHDKPVGLLNVDGYY+PLL+ DK EGFI R I V APT EL+ K+E+
Sbjct: 138 AWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHIIVLAPTPKELIEKLEE 197
Query: 194 YTRLHQEVAPATSWEISELGYGRT 217
Y+ H++V WE+ ++ Y +
Sbjct: 198 YSPQHEKVVSKMKWEMEQMSYPQN 221
>Os04g0518800 Similar to Lysine decarboxylase-like protein
Length = 250
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 125/204 (61%), Positives = 157/204 (76%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRF ICVFCGS+ G+++ + DAA++LG ELV R +DLVYGGGS+GLMGL+++ V +GGR
Sbjct: 25 SRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDLVYGGGSVGLMGLVSQAVYNGGR 84
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
V+GVIP+ LM EI+GE+VGEV V DMH+RKAEMAR+S AFIALPGGYGT+EELLE+I
Sbjct: 85 HVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 144
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
W QLGIHDKPVGLLNVDGYY+ LL+ DK E FI+ R I V APT ELL K+E
Sbjct: 145 AWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLEA 204
Query: 194 YTRLHQEVAPATSWEISELGYGRT 217
Y+ H +V P WE+ ++ Y ++
Sbjct: 205 YSPRHDKVVPKMQWEMEKMSYCKS 228
>Os03g0109300 Similar to Lysine decarboxylase-like protein
Length = 211
Score = 270 bits (690), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 129/201 (64%), Positives = 153/201 (76%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRF CVFCGS+ G + + DAA+DL ELV RG+DLVYGGGSIGLMGL+++ V DGGR
Sbjct: 11 SRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGR 70
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
V+GVIP+ LM EI GE+VGEV V DMH+RKAEMAR+S AFIALPGGYGT+EELLE+I
Sbjct: 71 HVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 130
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
TW QLGIH KPVGLLNVDGYY+ LL D+ EGFI+ R+I VSAPTA EL+ K+E+
Sbjct: 131 TWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEE 190
Query: 194 YTRLHQEVAPATSWEISELGY 214
Y H VA +WE LG+
Sbjct: 191 YVPYHDRVASGLNWETGHLGF 211
>Os01g0588900 Conserved hypothetical protein 730 family protein
Length = 242
Score = 253 bits (647), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 145/182 (79%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRF ICV+CGS GR+ + DAA++LG ELV RG+DLVYGGGSIGLMGL++ V DGGR
Sbjct: 33 SRFRRICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVHDGGR 92
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
V+GVIP++LM E++GE VGEV V MHERKAEMAR + AFIALPGGYGT+EELLE+I
Sbjct: 93 HVIGVIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPGGYGTLEELLEVI 152
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
TW QLGIH KPVGLLNVDG+YDP L+ D +EGFI D R+I +SAPTA EL+ K+E+
Sbjct: 153 TWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVLKLEE 212
Query: 194 YT 195
Y
Sbjct: 213 YV 214
>Os09g0547500 Similar to Lysine decarboxylase-like protein
Length = 227
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/182 (64%), Positives = 142/182 (78%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRF +CVFCGS++G+RR + DAA++LG ELV R VDLVYGGGS+GLMG +A V +GG
Sbjct: 44 SRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGG 103
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
V+GVIP LM E++GE+VGEV V MHERKAEMARRS AF+ALPGGYGT+EE++E+I
Sbjct: 104 HVIGVIPTTLMGKEVTGETVGEVREVGSMHERKAEMARRSDAFVALPGGYGTLEEVVEVI 163
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
W QLGIH KPVGLLNVDGYYD LLA DK A+GFI R +FVSAP A L+ K+E+
Sbjct: 164 AWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLEE 223
Query: 194 YT 195
Y
Sbjct: 224 YV 225
>Os05g0591600 Similar to Lysine decarboxylase-like protein
Length = 275
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/189 (61%), Positives = 141/189 (74%), Gaps = 9/189 (4%)
Query: 16 FGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGRRV 75
F ICV+CGS G++ + DAA+DLG ELV RG+DLVYGGGSIGLMGL++ V GGR V
Sbjct: 57 FRRICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHV 116
Query: 76 VGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALP---------GGYGTM 126
+G+IP++LM E++GE VGEV V MHERKAEMAR + AFIALP GGYGT+
Sbjct: 117 IGIIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTL 176
Query: 127 EELLEMITWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASE 186
EELLE+ITW QLGIH KPVGLLNVDG+Y+PLL+ D EGFI + R+I +SAPTA E
Sbjct: 177 EELLEVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKE 236
Query: 187 LLTKMEQYT 195
L+ K+E Y
Sbjct: 237 LVMKLEDYV 245
>Os03g0857900 Similar to Lysine decarboxylase-like protein
Length = 246
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/198 (60%), Positives = 148/198 (74%), Gaps = 1/198 (0%)
Query: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
SRF +CVFCGS+ G++ + AA+ LG +LV RG+DLVYGGGS+GLMGL++R V GG
Sbjct: 30 SRFRRVCVFCGSSPGKKASYQVAAVQLGQQLVERGIDLVYGGGSVGLMGLVSRAVHGGGG 89
Query: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
VVGV+P ++ E+ GE++GEV V MH+RKAEMAR S AFIALPGGYGT+EELLE+I
Sbjct: 90 HVVGVVPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
Query: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
TW QL IH KPVGLLNVDGYYD LLA DK EGF++ R+I V+APTAS+LL K+E+
Sbjct: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
Query: 194 YT-RLHQEVAPATSWEIS 210
Y H A +WE+S
Sbjct: 210 YVPPPHDATALKLTWEMS 227
>Os03g0697200 Similar to Lysine decarboxylase-like protein
Length = 230
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 143/176 (81%)
Query: 18 TICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGRRVVG 77
TICVFCGS G R F AALDLG +LV R +DLVYGGGS GLMGL+++TV DGGR V+G
Sbjct: 22 TICVFCGSRRGNRPSFSAAALDLGKQLVERELDLVYGGGSGGLMGLVSKTVHDGGRHVLG 81
Query: 78 VIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMITWCQ 137
VIP AL+ E+SGE++GE VV+DMHERK+EMA+ + AFIALPGGYGT+EELLE+I W Q
Sbjct: 82 VIPSALLPEEVSGETLGEAKVVRDMHERKSEMAKHADAFIALPGGYGTIEELLEIIAWAQ 141
Query: 138 LGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
LGIH+KPVGLLNVDGYY+ LL+LFDKG EGFI++ R IFV A A ELLTK+ +
Sbjct: 142 LGIHNKPVGLLNVDGYYNNLLSLFDKGVEEGFIDAAARNIFVLADNAGELLTKLTE 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,773,823
Number of extensions: 333892
Number of successful extensions: 658
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 11
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)