Os03g0857900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lysine decarboxylase-like protein.
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Os03g0857900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lysine decarboxylase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.07 | 0.364 | 12.3 | 0.869 | 2.14 | -0.419 | -0.667 | -1.18 | 0.291 | 23.7 | 83 | 1389 | -- | -- |
| 61.86 | 0.366 | 12.3 | 0.957 | 2.09 | -0.458 | -0.673 | -- | 0.304 | 23.6 | 82.4 | 1597 | -- | -- |
| 60.41 | 0.362 | 12.3 | 0.911 | 2.24 | -0.406 | -- | -1.81 | 0.3 | 23.7 | 83 | 1067 | -- | -- |
| 64.02 | 0.373 | 12.3 | 0.995 | 2.11 | -0.518 | -- | -- | 0.304 | 23.7 | 83 | 1490 | -- | -- |
| 240.71 | 0.727 | 12.3 | 0.968 | -- | -2.04 | -- | 0.358 | 0.364 | -- | 150 | 889 | -- | -- |
| 68.32 | 0.387 | 12.3 | 0.897 | 2.1 | -- | -0.784 | -- | 0.324 | 23.7 | -- | -- | -- | -- |
| 70.98 | 0.395 | 12.3 | 0.929 | 2.11 | -- | -- | -- | 0.327 | 23.7 | -- | -- | -- | -- |
| 240.94 | 0.726 | 12.3 | 0.963 | -- | -2.03 | -- | -- | 0.364 | -- | 150 | 889 | -- | -- |
| 73.67 | 0.4 | 12.3 | -- | 2.06 | -1.04 | -- | -- | 0.236 | 23.5 | 68.02 | 24762 | -- | -- |
| 349.99 | 0.874 | 12.3 | 0.989 | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
| 93.72 | 0.453 | 12.3 | -- | 2.12 | -- | -- | -- | 0.224 | 23.7 | -- | -- | -- | -- |
| 265.39 | 0.761 | 12.3 | -- | -- | -2.04 | -- | -- | 0.257 | -- | 150 | 889 | -- | -- |
| 375.79 | 0.905 | 12.3 | -- | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 2 | 55.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 3 | 55.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 4 | 55.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 7 | 55.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 10 | 55.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 11 | 55.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 12 | 55.46 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 13 | 55.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 14 | 55.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 15 | 55.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 19 | 55.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 23 | 55.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 24 | 55.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 28 | 55.62 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 7 |
| 102 | 56.25 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 21 | NA |
| 103 | 56.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 8 |
| 106 | 56.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 12 |
| 119 | 56.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 11 |
| 134 | 56.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 135 | 56.38 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 200 | 56.52 | wind | 5.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 211 | 56.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 218 | 56.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 221 | 56.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 7 |
| 258 | 56.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 262 | 56.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 14 |
| 263 | 56.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 266 | 56.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 267 | 56.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 271 | 56.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 282 | 56.76 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 283 | 56.76 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 21 | NA |
| 286 | 56.76 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 289 | 56.77 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 298 | 56.81 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 316 | 56.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 320 | 56.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 11 |
| 405 | 56.98 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 412 | 56.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 522 | 57.12 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 548 | 57.15 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 688 | 57.39 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 710 | 57.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 748 | 57.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 771 | 57.62 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 772 | 57.62 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 841 | 57.71 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 853 | 57.73 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 861 | 57.76 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 876 | 57.80 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 894 | 57.86 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 900 | 57.88 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 901 | 57.88 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 905 | 57.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 907 | 57.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 911 | 57.91 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 926 | 57.97 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 933 | 57.98 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 943 | 58.00 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 945 | 58.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 964 | 58.03 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 965 | 58.03 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 969 | 58.04 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 973 | 58.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 10 |