BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0857900 Os03g0857900|AK071705
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0857900 Similar to Lysine decarboxylase-like protein 402 e-112
Os03g0109300 Similar to Lysine decarboxylase-like protein 233 8e-62
Os10g0479500 Similar to Lysine decarboxylase-like protein 232 2e-61
Os04g0518800 Similar to Lysine decarboxylase-like protein 230 8e-61
Os02g0628000 226 9e-60
Os01g0588900 Conserved hypothetical protein 730 family protein 216 9e-57
Os05g0591600 Similar to Lysine decarboxylase-like protein 207 8e-54
Os09g0547500 Similar to Lysine decarboxylase-like protein 203 1e-52
Os01g0708500 Conserved hypothetical protein 730 family protein 194 7e-50
Os05g0541200 Conserved hypothetical protein 730 family protein 183 1e-46
Os03g0697200 Similar to Lysine decarboxylase-like protein 174 6e-44
>Os03g0857900 Similar to Lysine decarboxylase-like protein
Length = 246
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/246 (81%), Positives = 201/246 (81%)
Query: 1 MMMENSREQQPESSPANNNSXXXXXXXTASRFRRVCVFCGSSPGKKASYXXXXXXXXXXX 60
MMMENSREQQPESSPANNNS TASRFRRVCVFCGSSPGKKASY
Sbjct: 1 MMMENSREQQPESSPANNNSKKKKKKKTASRFRRVCVFCGSSPGKKASYQVAAVQLGQQL 60
Query: 61 XERGIDXXXXXXXXXXXXXXSRAXXXXXXXXXXXXPNGVLPRELIGETLGEVRAVGSMHQ 120
ERGID SRA PNGVLPRELIGETLGEVRAVGSMHQ
Sbjct: 61 VERGIDLVYGGGSVGLMGLVSRAVHGGGGHVVGVVPNGVLPRELIGETLGEVRAVGSMHQ 120
Query: 121 RKAEMARESDAFIALPGGYGTLEELLEVITWAQLRIHHKPVGLLNVDGYYDSLLAFIDKA 180
RKAEMARESDAFIALPGGYGTLEELLEVITWAQLRIHHKPVGLLNVDGYYDSLLAFIDKA
Sbjct: 121 RKAEMARESDAFIALPGGYGTLEELLEVITWAQLRIHHKPVGLLNVDGYYDSLLAFIDKA 180
Query: 181 VHEGFVSPPARRIIVAAPTASDLLCKLEEYVPPPHDATALKLTWEMSTVSEQHAGSIYSP 240
VHEGFVSPPARRIIVAAPTASDLLCKLEEYVPPPHDATALKLTWEMSTVSEQHAGSIYSP
Sbjct: 181 VHEGFVSPPARRIIVAAPTASDLLCKLEEYVPPPHDATALKLTWEMSTVSEQHAGSIYSP 240
Query: 241 KPDMAR 246
KPDMAR
Sbjct: 241 KPDMAR 246
>Os03g0109300 Similar to Lysine decarboxylase-like protein
Length = 211
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 119/196 (60%), Positives = 133/196 (67%), Gaps = 1/196 (0%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
SRF+R CVFCGSS G K +Y RGID S+A
Sbjct: 11 SRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGGR 70
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++ E+IGET+GEVR V MHQRKAEMAR+SDAFIALPGGYGTLEELLEVI
Sbjct: 71 HVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 130
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
TWAQL IHHKPVGLLNVDGYY+SLL FID+AV EGF+SP ARRIIV+APTA +L+ KLEE
Sbjct: 131 TWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLEE 190
Query: 210 YVPPPHDATALKLTWE 225
YV P HD A L WE
Sbjct: 191 YV-PYHDRVASGLNWE 205
>Os10g0479500 Similar to Lysine decarboxylase-like protein
Length = 215
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/198 (60%), Positives = 133/198 (67%), Gaps = 1/198 (0%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
SRF+R+CVFCGSS GKK SY R ID S+A
Sbjct: 15 SRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIGLMGLVSQAVFDGGR 74
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++ E+ GET+GEVR V MHQRKAEMAR+SDAFIALPGGYGTLEELLEVI
Sbjct: 75 HVIGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 134
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
TWAQL IHHKPVGLLNVDGYY+SLL FIDKAV EGF++ ARRIIV APTA +L+ KLEE
Sbjct: 135 TWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVMAPTAEELMDKLEE 194
Query: 210 YVPPPHDATALKLTWEMS 227
YV P HD A KL WEM
Sbjct: 195 YV-PYHDRVASKLNWEMG 211
>Os04g0518800 Similar to Lysine decarboxylase-like protein
Length = 250
Score = 230 bits (586), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/201 (58%), Positives = 132/201 (65%), Gaps = 1/201 (0%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
SRFRR+CVFCGSS GKK SY R ID S+A
Sbjct: 25 SRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDLVYGGGSVGLMGLVSQAVYNGGR 84
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++PRE+ GET+GEV+AV MHQRKAEMAR+SDAFIALPGGYGTLEELLEVI
Sbjct: 85 HVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 144
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
WAQL IH KPVGLLNVDGYY+SLL+FIDKAV E F+SP AR IIV APT +LL KLE
Sbjct: 145 AWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLEA 204
Query: 210 YVPPPHDATALKLTWEMSTVS 230
Y P HD K+ WEM +S
Sbjct: 205 Y-SPRHDKVVPKMQWEMEKMS 224
>Os02g0628000
Length = 289
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/212 (56%), Positives = 134/212 (63%), Gaps = 1/212 (0%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
SRFRRVCVFCGSS GKK Y R ID S+A
Sbjct: 18 SRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSVGLMGLVSQAVHNGGR 77
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++PRE+ GET+GEV+AV MHQRKAEMAR+SDAFIALPGGYGTLEELLEVI
Sbjct: 78 HVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 137
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
WAQL IH KPVGLLNVDGYY+ LL+FIDKAV EGF+ P AR IIV APT +L+ KLEE
Sbjct: 138 AWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHIIVLAPTPKELIEKLEE 197
Query: 210 YVPPPHDATALKLTWEMSTVSEQHAGSIYSPK 241
Y P H+ K+ WEM +S I PK
Sbjct: 198 Y-SPQHEKVVSKMKWEMEQMSYPQNYDIPRPK 228
>Os01g0588900 Conserved hypothetical protein 730 family protein
Length = 242
Score = 216 bits (551), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 108/183 (59%), Positives = 126/183 (68%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
SRFRR+CV+CGS+ G+KASY ERGID S A
Sbjct: 33 SRFRRICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVHDGGR 92
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++PRE+ GE +GEVRAV MH+RKAEMAR +DAFIALPGGYGTLEELLEVI
Sbjct: 93 HVIGVIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPGGYGTLEELLEVI 152
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
TWAQL IH KPVGLLNVDG+YD L+FID AV EGF++ ARRII++APTA +L+ KLEE
Sbjct: 153 TWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVLKLEE 212
Query: 210 YVP 212
YVP
Sbjct: 213 YVP 215
>Os05g0591600 Similar to Lysine decarboxylase-like protein
Length = 275
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 130/203 (64%), Gaps = 13/203 (6%)
Query: 32 FRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXXXX 91
FRR+CV+CGS+ GKK SY ERGID S A
Sbjct: 57 FRRICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHV 116
Query: 92 XXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALP---------GGYGTL 142
P ++PRE+ GE +GEVRAV MH+RKAEMAR +DAFIALP GGYGTL
Sbjct: 117 IGIIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTL 176
Query: 143 EELLEVITWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASD 202
EELLEVITWAQL IH KPVGLLNVDG+Y+ LL+FID AV+EGF++ ARRII++APTA +
Sbjct: 177 EELLEVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKE 236
Query: 203 LLCKLEEYVPPPHDATALKLTWE 225
L+ KLE+YVP ++ L WE
Sbjct: 237 LVMKLEDYVP----EYSIGLVWE 255
>Os09g0547500 Similar to Lysine decarboxylase-like protein
Length = 227
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/183 (55%), Positives = 120/183 (65%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
SRFRRVCVFCGSS GK+ SY R +D + A
Sbjct: 44 SRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGGG 103
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++ +E+ GET+GEVR VGSMH+RKAEMAR SDAF+ALPGGYGTLEE++EVI
Sbjct: 104 HVIGVIPTTLMGKEVTGETVGEVREVGSMHERKAEMARRSDAFVALPGGYGTLEEVVEVI 163
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
WAQL IH KPVGLLNVDGYYD LLAF+DKAV +GF+ P R + V+AP A L+ KLEE
Sbjct: 164 AWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLEE 223
Query: 210 YVP 212
YVP
Sbjct: 224 YVP 226
>Os01g0708500 Conserved hypothetical protein 730 family protein
Length = 223
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 96/201 (47%), Positives = 123/201 (61%), Gaps = 1/201 (0%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
RF R+CVFCGS+ G +A + RGI+ ++
Sbjct: 16 GRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGGC 75
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++P E+ G ++GEV+ V MH+RKAEMAR+SDAFIALPGGYGT+EELLE+I
Sbjct: 76 GVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEMI 135
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
TW+QL IH KPVGLLNVDGYYD LLA DK EGF+ R+IIV+APTA +LL K+E+
Sbjct: 136 TWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKMEQ 195
Query: 210 YVPPPHDATALKLTWEMSTVS 230
Y H A + +WEMS +
Sbjct: 196 YT-RSHQEVAPRTSWEMSELG 215
>Os05g0541200 Conserved hypothetical protein 730 family protein
Length = 223
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 118/198 (59%), Gaps = 1/198 (0%)
Query: 30 SRFRRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXX 89
SRF +CVFCGS+ G++ + RG+D +R
Sbjct: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
Query: 90 XXXXXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
P ++ E+ GE++GEV V MH+RKAEMAR S AFIALPGGYGT+EELLE+I
Sbjct: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
Query: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
TW QL IH KPVGLLNVDGYYD LLA DK EGF++ R+I V+APTAS+LL K+E+
Sbjct: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
Query: 210 YVPPPHDATALKLTWEMS 227
Y H A +WE+S
Sbjct: 194 YT-RLHQEVAPATSWEIS 210
>Os03g0697200 Similar to Lysine decarboxylase-like protein
Length = 230
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 107/177 (60%)
Query: 33 RRVCVFCGSSPGKKASYXXXXXXXXXXXXERGIDXXXXXXXXXXXXXXSRAXXXXXXXXX 92
R +CVFCGS G + S+ ER +D S+
Sbjct: 21 RTICVFCGSRRGNRPSFSAAALDLGKQLVERELDLVYGGGSGGLMGLVSKTVHDGGRHVL 80
Query: 93 XXXPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVITWA 152
P+ +LP E+ GETLGE + V MH+RK+EMA+ +DAFIALPGGYGT+EELLE+I WA
Sbjct: 81 GVIPSALLPEEVSGETLGEAKVVRDMHERKSEMAKHADAFIALPGGYGTIEELLEIIAWA 140
Query: 153 QLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
QL IH+KPVGLLNVDGYY++LL+ DK V EGF+ AR I V A A +LL KL E
Sbjct: 141 QLGIHNKPVGLLNVDGYYNNLLSLFDKGVEEGFIDAAARNIFVLADNAGELLTKLTE 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,563,840
Number of extensions: 290249
Number of successful extensions: 631
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 11
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)