Os04g0518800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lysine decarboxylase-like protein.
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Os04g0518800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lysine decarboxylase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 373.13 | 0.908 | 5.03 | -4.53 | 2.11 | -2.68 | -0.874 | -5.3 | -0.544 | 18.1 | 20.86 | 9351 | -- | -- |
| 402.35 | 0.934 | 4.77 | -3.97 | 2.12 | -1.76 | 0.0508 | -- | -0.425 | 18 | 23 | 8371 | -- | -- |
| 374.16 | 0.901 | 5.04 | -4.53 | 2.11 | -2.74 | -- | -5.48 | -0.582 | 18.2 | 20.7 | 9398 | -- | -- |
| 386.94 | 0.916 | 4.74 | -4.1 | 2.08 | -1.58 | -- | -- | -0.156 | 18.2 | 23.7 | 11967 | -- | -- |
| 598.66 | 1.14 | 5 | -4.41 | -- | -2.82 | -- | -5.27 | -0.575 | -- | 20.8 | 10000 | -- | -- |
| 454.24 | 0.999 | 4.91 | -5.07 | 2.11 | -- | -1.05 | -- | -0.936 | 18 | -- | -- | -- | -- |
| 456.68 | 1 | 4.91 | -5.06 | 2.11 | -- | -- | -- | -0.941 | 18.1 | -- | -- | -- | -- |
| 606.42 | 1.15 | 4.7 | -4.11 | -- | -1.66 | -- | -- | -0.193 | -- | 24 | 11450 | -- | -- |
| 429.22 | 0.965 | 4.48 | -- | 2.01 | -3.89 | -- | -- | 0.874 | 18.4 | 21 | 47520 | -- | -- |
| 686.88 | 1.22 | 4.88 | -5.12 | -- | -- | -- | -- | -0.988 | -- | -- | -- | -- | -- |
| 1131.02 | 1.57 | 4.79 | -- | 2.18 | -- | -- | -- | -0.377 | 17.9 | -- | -- | -- | -- |
| 654 | 1.19 | 4.45 | -- | -- | -4 | -- | -- | 0.89 | -- | 21.09 | 47520 | -- | -- |
| 1378.04 | 1.73 | 4.75 | -- | -- | -- | -- | -- | -0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 370.40 | temperature | 20 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 3 | 370.60 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 26 | 371.65 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 32 | 371.78 | temperature | 25 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 64 | 372.50 | temperature | 25 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 71 | 372.64 | temperature | 25 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 93 | 373.07 | temperature | 15 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 170 | 373.91 | temperature | 20 | 14400 | > th | dose independent | sin | 8 | NA |
| 171 | 373.92 | temperature | 20 | 14400 | < th | dose independent | sin | 8 | NA |
| 323 | 374.95 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 366 | 375.23 | temperature | 10 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 367 | 375.23 | temperature | 20 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 438 | 375.54 | temperature | 25 | 14400 | < th | dose dependent | sin | 11 | NA |
| 589 | 376.14 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 692 | 376.53 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 968 | 377.37 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |