BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0518800 Os04g0518800|AK069293
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0518800 Similar to Lysine decarboxylase-like protein 483 e-137
Os02g0628000 379 e-106
Os10g0479500 Similar to Lysine decarboxylase-like protein 317 4e-87
Os03g0109300 Similar to Lysine decarboxylase-like protein 301 2e-82
Os01g0588900 Conserved hypothetical protein 730 family protein 267 7e-72
Os09g0547500 Similar to Lysine decarboxylase-like protein 263 7e-71
Os05g0591600 Similar to Lysine decarboxylase-like protein 257 5e-69
Os01g0708500 Conserved hypothetical protein 730 family protein 256 1e-68
Os03g0857900 Similar to Lysine decarboxylase-like protein 249 2e-66
Os05g0541200 Conserved hypothetical protein 730 family protein 241 4e-64
Os03g0697200 Similar to Lysine decarboxylase-like protein 234 4e-62
>Os04g0518800 Similar to Lysine decarboxylase-like protein
Length = 250
Score = 483 bits (1242), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/250 (94%), Positives = 236/250 (94%)
Query: 1 MMDTDHTEIIKEGEAVVEAMALLQSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNI 60
MMDTDHTEIIKEGEAVVEAMALLQSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNI
Sbjct: 1 MMDTDHTEIIKEGEAVVEAMALLQSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNI 60
Query: 61 DXXXXXXXXXXXXXXSQAVYNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEM 120
D SQAVYNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEM
Sbjct: 61 DLVYGGGSVGLMGLVSQAVYNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEM 120
Query: 121 ARQSDAFIALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEF 180
ARQSDAFIALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEF
Sbjct: 121 ARQSDAFIALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEF 180
Query: 181 ISPSARHIIVLAPTPKELLEKLEAYSPRHDKVVPKMQWEMEKMSYCKSCEIPGLKEGNKA 240
ISPSARHIIVLAPTPKELLEKLEAYSPRHDKVVPKMQWEMEKMSYCKSCEIPGLKEGNKA
Sbjct: 181 ISPSARHIIVLAPTPKELLEKLEAYSPRHDKVVPKMQWEMEKMSYCKSCEIPGLKEGNKA 240
Query: 241 TIQAQRGSML 250
TIQAQRGSML
Sbjct: 241 TIQAQRGSML 250
>Os02g0628000
Length = 289
Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/241 (78%), Positives = 205/241 (85%), Gaps = 1/241 (0%)
Query: 10 IKEGEAVVEAMALLQSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXX 69
IK+ E E ++QSRFRR+CVFCGSS GKKK YQDAA+ELGKELVARNID
Sbjct: 3 IKDEETTAEVAMVVQSRFRRVCVFCGSSHGKKKIYQDAAIELGKELVARNIDLVYGGGSV 62
Query: 70 XXXXXXSQAVYNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIA 129
SQAV+NGGRHVIGVIPKTLMPREI+GETVGEVKAV+DMHQRKAEMARQSDAFIA
Sbjct: 63 GLMGLVSQAVHNGGRHVIGVIPKTLMPREISGETVGEVKAVSDMHQRKAEMARQSDAFIA 122
Query: 130 LPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHII 189
LPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYN LLSFIDKAVEE FI PSARHII
Sbjct: 123 LPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNPLLSFIDKAVEEGFIRPSARHII 182
Query: 190 VLAPTPKELLEKLEAYSPRHDKVVPKMQWEMEKMSYCKSCEIPGLKEGNKATIQAQRGSM 249
VLAPTPKEL+EKLE YSP+H+KVV KM+WEME+MSY ++ +IP KEG K I+AQRGS
Sbjct: 183 VLAPTPKELIEKLEEYSPQHEKVVSKMKWEMEQMSYPQNYDIPRPKEG-KMIIEAQRGSR 241
Query: 250 L 250
L
Sbjct: 242 L 242
>Os10g0479500 Similar to Lysine decarboxylase-like protein
Length = 215
Score = 317 bits (813), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 175/215 (81%)
Query: 11 KEGEAVVEAMALLQSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXX 70
+E + +VE + QSRF+RICVFCGSSQGKK+SY DAA+ELG ELVAR+ID
Sbjct: 1 QEEKRIVEEREMRQSRFKRICVFCGSSQGKKRSYHDAAIELGNELVARSIDLVYGGGSIG 60
Query: 71 XXXXXSQAVYNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIAL 130
SQAV++GGRHVIGVIPKTLM EI+GETVGEV+ VADMHQRKAEMARQSDAFIAL
Sbjct: 61 LMGLVSQAVFDGGRHVIGVIPKTLMTPEISGETVGEVRPVADMHQRKAEMARQSDAFIAL 120
Query: 131 PGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIV 190
PGGYGTLEELLEVI WAQLGIH KPVGLLNVDGYYNSLL+FIDKAVEE FI+ SAR IIV
Sbjct: 121 PGGYGTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIV 180
Query: 191 LAPTPKELLEKLEAYSPRHDKVVPKMQWEMEKMSY 225
+APT +EL++KLE Y P HD+V K+ WEM + Y
Sbjct: 181 MAPTAEELMDKLEEYVPYHDRVASKLNWEMGHLGY 215
>Os03g0109300 Similar to Lysine decarboxylase-like protein
Length = 211
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/202 (71%), Positives = 162/202 (80%)
Query: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXXXXXXXSQAVYNGG 83
+SRF+R CVFCGSSQG K +Y+DAAV+L KELVAR ID SQAVY+GG
Sbjct: 10 ESRFKRTCVFCGSSQGNKTTYRDAAVDLAKELVARGIDLVYGGGSIGLMGLVSQAVYDGG 69
Query: 84 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 143
RHVIGVIPKTLM EI GETVGEV+ V+DMHQRKAEMARQSDAFIALPGGYGTLEELLEV
Sbjct: 70 RHVIGVIPKTLMTPEIIGETVGEVRPVSDMHQRKAEMARQSDAFIALPGGYGTLEELLEV 129
Query: 144 IAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLE 203
I WAQLGIH KPVGLLNVDGYYNSLL+FID+AVEE FISPSAR IIV APT +EL++KLE
Sbjct: 130 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDQAVEEGFISPSARRIIVSAPTAQELMDKLE 189
Query: 204 AYSPRHDKVVPKMQWEMEKMSY 225
Y P HD+V + WE + +
Sbjct: 190 EYVPYHDRVASGLNWETGHLGF 211
>Os01g0588900 Conserved hypothetical protein 730 family protein
Length = 242
Score = 267 bits (682), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 129/187 (68%), Positives = 150/187 (80%)
Query: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXXXXXXXSQAVYNGG 83
+SRFRRICV+CGS++G+K SYQDAAVELGKELV R ID S AV++GG
Sbjct: 32 RSRFRRICVYCGSAKGRKASYQDAAVELGKELVERGIDLVYGGGSIGLMGLVSHAVHDGG 91
Query: 84 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 143
RHVIGVIPK+LMPRE+TGE VGEV+AV+ MH+RKAEMAR +DAFIALPGGYGTLEELLEV
Sbjct: 92 RHVIGVIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPGGYGTLEELLEV 151
Query: 144 IAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLE 203
I WAQLGIH KPVGLLNVDG+Y+ LSFID AV E FI+ AR II+ APT +EL+ KLE
Sbjct: 152 ITWAQLGIHKKPVGLLNVDGFYDPFLSFIDMAVSEGFIAEDARRIIISAPTARELVLKLE 211
Query: 204 AYSPRHD 210
Y P ++
Sbjct: 212 EYVPEYE 218
>Os09g0547500 Similar to Lysine decarboxylase-like protein
Length = 227
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 125/184 (67%), Positives = 146/184 (79%)
Query: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXXXXXXXSQAVYNGG 83
QSRFRR+CVFCGSS GK++SY+DAAVELGKELVAR +D ++AV NGG
Sbjct: 43 QSRFRRVCVFCGSSSGKRRSYRDAAVELGKELVARKVDLVYGGGSLGLMGEVAEAVRNGG 102
Query: 84 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 143
HVIGVIP TLM +E+TGETVGEV+ V MH+RKAEMAR+SDAF+ALPGGYGTLEE++EV
Sbjct: 103 GHVIGVIPTTLMGKEVTGETVGEVREVGSMHERKAEMARRSDAFVALPGGYGTLEEVVEV 162
Query: 144 IAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLE 203
IAWAQLGIH KPVGLLNVDGYY+ LL+F+DKAV + FI PS RH+ V AP L+ KLE
Sbjct: 163 IAWAQLGIHAKPVGLLNVDGYYDFLLAFVDKAVADGFIPPSHRHLFVSAPDAPSLVHKLE 222
Query: 204 AYSP 207
Y P
Sbjct: 223 EYVP 226
>Os05g0591600 Similar to Lysine decarboxylase-like protein
Length = 275
Score = 257 bits (657), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 146/192 (76%), Gaps = 9/192 (4%)
Query: 27 FRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXXXXXXXSQAVYNGGRHV 86
FRRICV+CGS++GKK SYQDAAV+LGKELV R ID S AV+ GGRHV
Sbjct: 57 FRRICVYCGSAKGKKPSYQDAAVDLGKELVERGIDLVYGGGSIGLMGLVSHAVHAGGRHV 116
Query: 87 IGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALP---------GGYGTL 137
IG+IPK+LMPRE+TGE VGEV+AV+ MH+RKAEMAR +DAFIALP GGYGTL
Sbjct: 117 IGIIPKSLMPREVTGEPVGEVRAVSGMHERKAEMARFADAFIALPVIDPYPKMLGGYGTL 176
Query: 138 EELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKE 197
EELLEVI WAQLGIH KPVGLLNVDG+YN LLSFID AV E FI+ AR II+ APT KE
Sbjct: 177 EELLEVITWAQLGIHKKPVGLLNVDGFYNPLLSFIDLAVNEGFITEEARRIIISAPTAKE 236
Query: 198 LLEKLEAYSPRH 209
L+ KLE Y P +
Sbjct: 237 LVMKLEDYVPEY 248
>Os01g0708500 Conserved hypothetical protein 730 family protein
Length = 223
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 149/207 (71%)
Query: 24 QSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXXXXXXXSQAVYNGG 83
+ RF RICVFCGS+ G + + DAA++LG+ELV+R I+ +Q V +GG
Sbjct: 15 RGRFGRICVFCGSNAGNRAVFGDAALQLGQELVSRGIELVYGGGSVGLMGLIAQTVLDGG 74
Query: 84 RHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEV 143
V+GVIPK LMP EI+G +VGEVK V+DMH+RKAEMARQSDAFIALPGGYGT+EELLE+
Sbjct: 75 CGVLGVIPKALMPTEISGASVGEVKIVSDMHERKAEMARQSDAFIALPGGYGTMEELLEM 134
Query: 144 IAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLE 203
I W+QLGIHDKPVGLLNVDGYY+ LL+ DK E FI R IIV APT ELL K+E
Sbjct: 135 ITWSQLGIHDKPVGLLNVDGYYDPLLALFDKGAAEGFIKADCRQIIVSAPTAHELLRKME 194
Query: 204 AYSPRHDKVVPKMQWEMEKMSYCKSCE 230
Y+ H +V P+ WEM ++ Y K+ E
Sbjct: 195 QYTRSHQEVAPRTSWEMSELGYGKTPE 221
>Os03g0857900 Similar to Lysine decarboxylase-like protein
Length = 246
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/201 (66%), Positives = 153/201 (76%), Gaps = 1/201 (0%)
Query: 25 SRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXXXXXXXSQAVYNGGR 84
SRFRR+CVFCGSS GKK SYQ AAV+LG++LV R ID S+AV+ GG
Sbjct: 30 SRFRRVCVFCGSSPGKKASYQVAAVQLGQQLVERGIDLVYGGGSVGLMGLVSRAVHGGGG 89
Query: 85 HVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 144
HV+GV+P ++PRE+ GET+GEV+AV MHQRKAEMAR+SDAFIALPGGYGTLEELLEVI
Sbjct: 90 HVVGVVPNGVLPRELIGETLGEVRAVGSMHQRKAEMARESDAFIALPGGYGTLEELLEVI 149
Query: 145 AWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLEA 204
WAQL IH KPVGLLNVDGYY+SLL+FIDKAV E F+SP AR IIV APT +LL KLE
Sbjct: 150 TWAQLRIHHKPVGLLNVDGYYDSLLAFIDKAVHEGFVSPPARRIIVAAPTASDLLCKLEE 209
Query: 205 Y-SPRHDKVVPKMQWEMEKMS 224
Y P HD K+ WEM +S
Sbjct: 210 YVPPPHDATALKLTWEMSTVS 230
>Os05g0541200 Conserved hypothetical protein 730 family protein
Length = 223
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 143/204 (70%)
Query: 25 SRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNIDXXXXXXXXXXXXXXSQAVYNGGR 84
SRF ICVFCGS+ G+++ + DAA++LG ELV R +D ++ V +GGR
Sbjct: 14 SRFGTICVFCGSNAGRRRVFGDAALDLGHELVRRGVDLVYGGGSIGLMGLIARTVLDGGR 73
Query: 85 HVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMARQSDAFIALPGGYGTLEELLEVI 144
V+GVIP+ LM EI+GE+VGEV V DMH+RKAEMAR+S AFIALPGGYGT+EELLE+I
Sbjct: 74 RVVGVIPRALMAVEISGESVGEVIVVQDMHERKAEMARRSKAFIALPGGYGTMEELLEMI 133
Query: 145 AWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFISPSARHIIVLAPTPKELLEKLEA 204
W QLGIHDKPVGLLNVDGYY+ LL+ DK E FI+ R I V APT ELL K+E
Sbjct: 134 TWCQLGIHDKPVGLLNVDGYYDPLLALFDKGEAEGFINSDCRQIFVSAPTASELLTKMEQ 193
Query: 205 YSPRHDKVVPKMQWEMEKMSYCKS 228
Y+ H +V P WE+ ++ Y ++
Sbjct: 194 YTRLHQEVAPATSWEISELGYGRT 217
>Os03g0697200 Similar to Lysine decarboxylase-like protein
Length = 230
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 143/201 (71%), Gaps = 6/201 (2%)
Query: 2 MDTDHTEIIKEGEAVVEAMALLQSRFRRICVFCGSSQGKKKSYQDAAVELGKELVARNID 61
MD +H ++++ G + R ICVFCGS +G + S+ AA++LGK+LV R +D
Sbjct: 1 MDANHDKVVESGSRGG------RGPVRTICVFCGSRRGNRPSFSAAALDLGKQLVERELD 54
Query: 62 XXXXXXXXXXXXXXSQAVYNGGRHVIGVIPKTLMPREITGETVGEVKAVADMHQRKAEMA 121
S+ V++GGRHV+GVIP L+P E++GET+GE K V DMH+RK+EMA
Sbjct: 55 LVYGGGSGGLMGLVSKTVHDGGRHVLGVIPSALLPEEVSGETLGEAKVVRDMHERKSEMA 114
Query: 122 RQSDAFIALPGGYGTLEELLEVIAWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEEFI 181
+ +DAFIALPGGYGT+EELLE+IAWAQLGIH+KPVGLLNVDGYYN+LLS DK VEE FI
Sbjct: 115 KHADAFIALPGGYGTIEELLEIIAWAQLGIHNKPVGLLNVDGYYNNLLSLFDKGVEEGFI 174
Query: 182 SPSARHIIVLAPTPKELLEKL 202
+AR+I VLA ELL KL
Sbjct: 175 DAAARNIFVLADNAGELLTKL 195
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,096,130
Number of extensions: 319985
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 11
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)