Os09g0547500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lysine decarboxylase-like protein.
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Os09g0547500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lysine decarboxylase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 323.86 | 0.846 | 9.49 | -0.43 | 1.93 | 0.104 | 1.09 | -7.38 | 0.666 | 1.72 | 20.16 | 4099 | 18.2 | 5.07 |
| 352.79 | 0.875 | 9.22 | -0.84 | 1.98 | 2.7 | 0.719 | -- | 0.714 | 1.71 | 14.2 | 47520 | 17.7 | 4.78 |
| 326.77 | 0.842 | 9.49 | -0.463 | 1.94 | 0.104 | -- | -7.18 | 0.68 | 1.73 | 20.24 | 4129 | 18.2 | 4.97 |
| 354.65 | 0.877 | 9.22 | -0.906 | 1.97 | 2.73 | -- | -- | 0.706 | 1.75 | 14.2 | 47520 | 16.8 | 5.78 |
| 550.98 | 1.09 | 9.49 | -0.449 | -- | 0.276 | -- | -7.35 | 0.678 | -- | 20.3 | 4138 | 18.2 | 4.77 |
| 461.58 | 1.01 | 9.07 | 1.4 | 2.01 | -- | 0.686 | -- | 1.35 | 1.67 | -- | -- | -- | -- |
| 463.41 | 1.01 | 9.07 | 1.37 | 2.01 | -- | -- | -- | 1.35 | 1.72 | -- | -- | -- | -- |
| 442.09 | 0.979 | 8.96 | 1.15 | -- | 2 | -- | -- | 1.01 | -- | 12.58 | 18105 | 16.6 | 4.23 |
| 363.47 | 0.888 | 9.17 | -- | 1.97 | 2.12 | -- | -- | 0.904 | 1.71 | 14.1 | 47520 | 16.3 | 5.22 |
| 708.88 | 1.24 | 9.05 | 1.46 | -- | -- | -- | -- | 1.39 | -- | -- | -- | -- | -- |
| 513.16 | 1.06 | 9.11 | -- | 2.03 | -- | -- | -- | 1.19 | 1.74 | -- | -- | -- | -- |
| 383.72 | 0.912 | 8.96 | -- | -- | 3.6 | -- | -- | 1.17 | -- | 12.6 | 18099 | 16.7 | 4.88 |
| 764.78 | 1.29 | 9.08 | -- | -- | -- | -- | -- | 1.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 305.00 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 2 | 305.22 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 3 | 305.90 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 5 | 306.72 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 46 | 314.80 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 51 | 315.15 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 58 | 315.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 105 | 318.91 | wind | 7 | 43200 | > th | dose independent | sin | 12 | NA |
| 106 | 318.93 | wind | 7 | 43200 | < th | dose independent | sin | 12 | NA |
| 130 | 319.64 | wind | 7 | 43200 | > th | dose dependent | sin | 12 | NA |
| 184 | 321.18 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 199 | 321.57 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 241 | 322.30 | temperature | 20 | 14400 | > th | dose independent | sin | 15 | NA |
| 243 | 322.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 329 | 323.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 331 | 323.74 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 339 | 323.88 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 347 | 323.97 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 419 | 324.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 435 | 324.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 444 | 325.07 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 448 | 325.10 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 450 | 325.11 | wind | 5 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 461 | 325.18 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 468 | 325.21 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 477 | 325.24 | wind | 7 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 491 | 325.36 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 493 | 325.40 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 510 | 325.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 525 | 325.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 535 | 325.71 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 567 | 325.97 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 570 | 325.99 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 576 | 326.02 | wind | 9 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 585 | 326.07 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 595 | 326.12 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 599 | 326.13 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 600 | 326.13 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 634 | 326.27 | wind | 3 | 43200 | > th | dose dependent | sin | 3 | NA |
| 691 | 326.57 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 698 | 326.60 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 717 | 326.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 850 | 327.36 | wind | 9 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 866 | 327.42 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 876 | 327.46 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 877 | 327.46 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 905 | 327.56 | wind | 9 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 972 | 327.81 | wind | 9 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 995 | 327.90 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 23 |