Os03g0697200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lysine decarboxylase-like protein.
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Os03g0697200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lysine decarboxylase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.88 | 0.567 | 3.8 | -1.87 | 0.657 | 0.866 | -1.79 | -0.921 | -0.176 | 16.2 | 23.7 | 1550 | -- | -- |
| 148.05 | 0.567 | 3.82 | -2.07 | 0.602 | 0.907 | -1.89 | -- | -0.191 | 15.9 | 23.6 | 1549 | -- | -- |
| 151.15 | 0.573 | 3.83 | -1.99 | 0.671 | 0.795 | -- | -0.888 | -0.246 | 18.1 | 23.6 | 1180 | -- | -- |
| 153.04 | 0.576 | 3.85 | -2.23 | 0.735 | 0.867 | -- | -- | -0.282 | 17.5 | 23.3 | 1908 | -- | -- |
| 173.54 | 0.614 | 3.81 | -1.76 | -- | 0.862 | -- | -1.3 | -0.166 | -- | 23.8 | 1148 | -- | -- |
| 176.92 | 0.624 | 3.93 | -2.56 | 0.678 | -- | -1.76 | -- | -0.653 | 16.2 | -- | -- | -- | -- |
| 183.14 | 0.634 | 3.94 | -2.58 | 0.714 | -- | -- | -- | -0.662 | 17.3 | -- | -- | -- | -- |
| 174.97 | 0.616 | 3.86 | -2.17 | -- | 1.01 | -- | -- | -0.316 | -- | 24.1 | 2790 | -- | -- |
| 171.09 | 0.609 | 3.81 | -- | 0.621 | 1.95 | -- | -- | -0.0754 | 19 | 18.6 | 47104 | -- | -- |
| 209.8 | 0.677 | 3.93 | -2.61 | -- | -- | -- | -- | -0.68 | -- | -- | -- | -- | -- |
| 358.72 | 0.886 | 3.87 | -- | 0.759 | -- | -- | -- | -0.375 | 17.1 | -- | -- | -- | -- |
| 186.69 | 0.636 | 3.74 | -- | -- | 2.23 | -- | -- | 0.158 | -- | 18.67 | 47520 | -- | -- |
| 388.9 | 0.92 | 3.86 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 3 | 135.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 7 | 136.58 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 8 | 136.74 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 11 | 136.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 13 | 136.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 4 |
| 16 | 137.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 17 | 137.31 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 32 | 137.68 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 11 |
| 43 | 137.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 60 | 138.37 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 81 | 138.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 86 | 138.83 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 89 | 138.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 115 | 139.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 142 | 139.66 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 143 | 139.67 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 179 | 140.16 | radiation | 1 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 223 | 140.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 239 | 140.66 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 251 | 140.76 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 256 | 140.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 374 | 141.80 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 399 | 141.99 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 402 | 142.02 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 437 | 142.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 449 | 142.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 508 | 142.74 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 16 |
| 532 | 142.90 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 2 |
| 544 | 142.95 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 548 | 142.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 604 | 143.31 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 608 | 143.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 689 | 143.81 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 767 | 144.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 794 | 144.36 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 800 | 144.37 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 828 | 144.47 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 830 | 144.49 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 847 | 144.59 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 869 | 144.66 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 875 | 144.67 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 876 | 144.67 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 881 | 144.67 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 885 | 144.68 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 917 | 144.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 973 | 144.94 | radiation | 40 | 43200 | < th | dose independent | sin | 14 | NA |