BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0525300 Os09g0525300|AK066620
(281 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0525300 Cyclin-like F-box domain containing protein 515 e-146
Os04g0571300 Cyclin-like F-box domain containing protein 338 3e-93
Os03g0116700 Cyclin-like F-box domain containing protein 336 1e-92
Os02g0675800 Cyclin-like F-box domain containing protein 323 9e-89
Os02g0224900 Conserved hypothetical protein 147 7e-36
Os10g0522400 Cyclin-like F-box domain containing protein 127 7e-30
Os02g0812500 Cyclin-like F-box domain containing protein 80 2e-15
Os12g0131600 Cyclin-like F-box domain containing protein 67 1e-11
Os02g0813300 Cyclin-like F-box domain containing protein 67 2e-11
Os08g0150700 Cyclin-like F-box domain containing protein 67 2e-11
Os01g0158400 Galactose-binding like domain containing protein 66 3e-11
>Os09g0525300 Cyclin-like F-box domain containing protein
Length = 281
Score = 515 bits (1327), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/266 (93%), Positives = 249/266 (93%)
Query: 16 ETALGDLPESCVAEVLRRLDPPEICRMARLSRTFHGVWEAKLPRNYXXXXXXXXXXXXXX 75
ETALGDLPESCVAEVLRRLDPPEICRMARLSRTFHGVWEAKLPRNY
Sbjct: 16 ETALGDLPESCVAEVLRRLDPPEICRMARLSRTFHGVWEAKLPRNYARLLAVAADGEAAA 75
Query: 76 XXXIPKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRYWNFIPN 135
IPKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRYWNFIPN
Sbjct: 76 LEAIPKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRYWNFIPN 135
Query: 136 DESRFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGW 195
DESRFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGW
Sbjct: 136 DESRFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGW 195
Query: 196 DIKPVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNELVKIQFAMVQIDCTHT 255
DIKPVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNELVKIQFAMVQIDCTHT
Sbjct: 196 DIKPVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNELVKIQFAMVQIDCTHT 255
Query: 256 KGGLCVDSVAVKPQYLAKKKASRIYV 281
KGGLCVDSVAVKPQYLAKKKASRIYV
Sbjct: 256 KGGLCVDSVAVKPQYLAKKKASRIYV 281
>Os04g0571300 Cyclin-like F-box domain containing protein
Length = 304
Score = 338 bits (866), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 197/274 (71%), Gaps = 20/274 (7%)
Query: 16 ETALGDLPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNY-------- 61
+T+LGD+PESCVA VL LDPPEIC++ARL+R F G VW AKLP NY
Sbjct: 20 QTSLGDMPESCVAAVLLYLDPPEICKVARLNRAFRGAASADCVWAAKLPANYRYLAALAA 79
Query: 62 ------XXXXXXXXXXXXXXXXXIPKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTIS 115
+ KKE+YARLCR DGGTKEFW++K GG+C++IS
Sbjct: 80 AADDDSGGDGATEGNGSRCSSAAMIKKEIYARLCRPTPFDGGTKEFWMEKNKGGLCISIS 139
Query: 116 SRALSITGIDDRRYWNFIPNDESRFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHL 175
S+A++ITGIDDRRYW+ + +ESRFH VAYL QIWW EV GE++FCFP G+YSLFFRL L
Sbjct: 140 SKAMAITGIDDRRYWSHLSTEESRFHHVAYLQQIWWLEVAGEIDFCFPAGSYSLFFRLQL 199
Query: 176 GRPLKRLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVK 235
GRP K +GRRVY E IHGW+IKP RFQLSTSD QQA S+ YL +PG WI +HVGDFVV
Sbjct: 200 GRPHKYMGRRVYGYESIHGWNIKPTRFQLSTSDDQQATSQYYLNEPGNWILYHVGDFVVS 259
Query: 236 SSNELVKIQFAMVQIDCTHTKGGLCVDSVAVKPQ 269
SS++L ++F+M+QIDCTHTKGGLCVDSV + P+
Sbjct: 260 SSDQLTNLKFSMMQIDCTHTKGGLCVDSVFIYPK 293
>Os03g0116700 Cyclin-like F-box domain containing protein
Length = 297
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 161/270 (59%), Positives = 192/270 (71%), Gaps = 11/270 (4%)
Query: 17 TALGDLPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYXXXX----- 65
LG+LPE C AEVL LD PEICR+ARL+R F G VWEAKLP NY
Sbjct: 22 AGLGELPELCAAEVLLHLDAPEICRLARLNRAFRGAAAADFVWEAKLPENYGYLLDFVDG 81
Query: 66 XXXXXXXXXXXXXIPKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALSITGID 125
+ KKEVYARL + DGG KE WL+K GGVC+ +SS++L ITGID
Sbjct: 82 AMEGGGGGRERSVMGKKEVYARLAKAVPFDGGKKELWLEKSKGGVCIALSSKSLVITGID 141
Query: 126 DRRYWNFIPNDESRFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLKRLGRR 185
DRRYW+ +P ESRFH+VAYL QIWWFEV GE+EFCFP GTYSL+FRLHLG+ R GRR
Sbjct: 142 DRRYWSHMPTTESRFHSVAYLQQIWWFEVVGELEFCFPAGTYSLYFRLHLGKASTRFGRR 201
Query: 186 VYSSEHIHGWDIKPVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNELVKIQF 245
V SSE IHGWD KPVRFQLSTSDGQ A S+CYL +PG WI +HVGDFV ++ + +K++F
Sbjct: 202 VCSSEQIHGWDKKPVRFQLSTSDGQHALSQCYLDEPGSWILYHVGDFVASTTEQPIKLKF 261
Query: 246 AMVQIDCTHTKGGLCVDSVAVKPQYLAKKK 275
++ QIDCTHTKGGLCVDSV + P+ ++K
Sbjct: 262 SLAQIDCTHTKGGLCVDSVLIYPKGFQQEK 291
>Os02g0675800 Cyclin-like F-box domain containing protein
Length = 297
Score = 323 bits (828), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 154/281 (54%), Positives = 198/281 (70%), Gaps = 16/281 (5%)
Query: 17 TALGDLPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYXXXXXXXXX 70
T+LGD+PESCVA VL LDPPEIC++ARL+R F G VW KLP NY
Sbjct: 17 TSLGDMPESCVAAVLLYLDPPEICQVARLNRAFRGAASADCVWAGKLPVNYRYLLAFAAA 76
Query: 71 XXXXXXXXI----------PKKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALS 120
KK+++ARLCR D G KEFW+DK GG+C++ISS+A+
Sbjct: 77 ADDEGGDGGHGNGKRSSPSSKKDIFARLCRPTPFDFGNKEFWIDKNKGGICLSISSKAMV 136
Query: 121 ITGIDDRRYWNFIPNDESRFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLK 180
ITGIDDRRYW+ + +ESRFH +AYL QIWW EV GE++FCFP G+YS+FFRLHLGRP +
Sbjct: 137 ITGIDDRRYWSQLATEESRFHHIAYLQQIWWLEVDGELDFCFPAGSYSIFFRLHLGRPYR 196
Query: 181 RLGRRVYSSEHIHGWDIKPVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNEL 240
R+GRR+ +E +HGW+ KP RFQLSTSD Q A S+ YL G WI +HVGDFVV +S+EL
Sbjct: 197 RMGRRICGTEQVHGWEAKPTRFQLSTSDEQHATSEYYLEQEGSWILYHVGDFVVLNSDEL 256
Query: 241 VKIQFAMVQIDCTHTKGGLCVDSVAVKPQYLAKKKASRIYV 281
+K++F+M+QIDCTHTKGGLCVDSV + P+ +KA+ +++
Sbjct: 257 MKLKFSMLQIDCTHTKGGLCVDSVLIYPKGYRHEKANIVHM 297
>Os02g0224900 Conserved hypothetical protein
Length = 237
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 85/110 (77%)
Query: 139 RFHAVAYLSQIWWFEVRGEVEFCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGWDIK 198
RFH+VAYL QIW FEV GE++F F TYSL+FR+HLGR KR GRR S+EH+HGWD K
Sbjct: 128 RFHSVAYLQQIWCFEVVGEIDFSFRVLTYSLYFRIHLGRFYKRFGRRACSTEHVHGWDQK 187
Query: 199 PVRFQLSTSDGQQAQSKCYLTDPGVWINHHVGDFVVKSSNELVKIQFAMV 248
PVRFQLSTSDGQ + S+C L +PG W+ +H G+FVV ++ +K++F+M
Sbjct: 188 PVRFQLSTSDGQHSLSQCSLGEPGSWVLYHAGNFVVSKPDQTIKLKFSMA 237
>Os10g0522400 Cyclin-like F-box domain containing protein
Length = 165
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 78/134 (58%), Gaps = 15/134 (11%)
Query: 21 DLPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYXXXXXXXXXXXXX 74
DLPE C AEVL RLD PEICR+ARL+ F G VWEAKLP NY
Sbjct: 32 DLPELCAAEVLLRLDAPEICRLARLNHAFRGAAGADFVWEAKLPENYRYLMSFVEGGGGG 91
Query: 75 XXXXIP---------KKEVYARLCRRNRLDGGTKEFWLDKGGGGVCMTISSRALSITGID 125
KKE+YARL R DGG+KEFWL+K G VCM +SS++L ITGID
Sbjct: 92 DDGRQLRRRRWRPAGKKEIYARLARPVPFDGGSKEFWLEKSKGRVCMALSSKSLVITGID 151
Query: 126 DRRYWNFIPNDESR 139
DRRYW IP ESR
Sbjct: 152 DRRYWQHIPTAESR 165
>Os02g0812500 Cyclin-like F-box domain containing protein
Length = 332
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 22 LPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYXXXXXXXXXXXXXX 75
LPE CVA + P + C + +S F VW++ LP ++
Sbjct: 14 LPEECVAYAISMTTPGDACHSSAVSPAFRAAADSDAVWDSFLPPDHAAILARADDGIAAA 73
Query: 76 XXXIPKKEVYARLCRRN-RLDGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRYWNFIP 134
KK+++ARLC R LD T F LD+ G C+ +S+RALSI DD W + P
Sbjct: 74 GECASKKDLFARLCGRPVLLDDATMSFGLDRRSGAKCVMLSARALSIAWGDDPSRWRWTP 133
Query: 135 N-DESRFHAVAYLSQIWWFEVRGEVEFCF--PEGTYSLFF 171
SRF VA L + W E+ G+++ P TY+ +
Sbjct: 134 GLPGSRFPEVAELLDVCWLEITGKLQLSLLSPATTYAAYL 173
>Os12g0131600 Cyclin-like F-box domain containing protein
Length = 185
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 17 TALGDLPESCVAEVLRRLDPPEICRMARLSRTF------HGVWEAKLPRNYXXXXXXXXX 70
+++ LPE+C+A + P + CR + +S F + VWE LP +Y
Sbjct: 28 SSISRLPEACLAHAISFTTPTDACRCSAVSADFQAAASSNAVWERFLPPDYHSILARADD 87
Query: 71 XXXXXXXXIPKKEVYARLCRRN-RLDGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRY 129
KE++ L + + LD +K FWL++ G C +SSR+L I DD RY
Sbjct: 88 PVDFT---TSNKELFLSLAQDHVLLDQRSKSFWLERTSGAKCYLLSSRSLEIAWGDDARY 144
Query: 130 WNFIPNDESRFHAVAYLSQIW 150
W +I +SRF SQ W
Sbjct: 145 WRWIYLPDSRF-----ASQTW 160
>Os02g0813300 Cyclin-like F-box domain containing protein
Length = 297
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 22 LPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYXXXXXXXXXXXXXX 75
LPE ++ + R P + C A +S F VW + LPRN
Sbjct: 14 LPEELLSAAISRASPRDACHAAAVSPAFRAAADSDAVWASFLPRNLPDLADGELSPAPAS 73
Query: 76 XXXIPKKEVYARLCRRNRL-DGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRYWNFIP 134
KKE++ RL L WLD+ G C +S+R+L I D YW +IP
Sbjct: 74 -----KKELFLRLSDGPYLLSDRLMSMWLDRETGAKCYMLSARSLVIIWGDTPHYWRWIP 128
Query: 135 NDESRFHAVAYLSQIWWFEVRGEV--EFCFPEGTYSLFF 171
+SRF A L + W E+RG + + P TY+ +
Sbjct: 129 LTDSRFAEGAELIDVCWLEIRGRIHSKMLSPNSTYAAYM 167
>Os08g0150700 Cyclin-like F-box domain containing protein
Length = 299
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 17 TALGDLPESCVAEVLRRLDPPEICRMARLSRTFHG------VWEAKLPRNYXXXXXXXXX 70
T +GDLPE+C+A+V+ P + CR+A +S +F VW+ LP +Y
Sbjct: 18 TRVGDLPEACLADVIALTSPRDACRLAAVSPSFRAAAESDAVWDRFLPPDYRAIAPLPPP 77
Query: 71 XXXXXXXXIP--KKEVYARLCRRN-RLDGGTKEFWLDKGGGGVCMTISSRALSITGIDDR 127
KK VY LC + +D G+ WL+K G C + +R LS+ D
Sbjct: 78 PATAAASGGKRMKKGVYLGLCDKPVPVDDGSMMVWLEKESGAKCFALPARKLSLPWEDGE 137
Query: 128 RYWNFIPNDESRFHAVAYLSQIWWFEVRGEV 158
W + P+ SRF VA L ++ G +
Sbjct: 138 FSWRWTPHPLSRFEEVAQLVDCTCLDIYGRL 168
>Os01g0158400 Galactose-binding like domain containing protein
Length = 244
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 26/187 (13%)
Query: 94 LDGGTKEFWLDKGGGGVCMTISSRALSITGIDDRRYWNFIPNDESRFHA-------VAYL 146
L G TK++W+D+ C + R LSIT +D R+W + P E A V L
Sbjct: 72 LAGKTKKYWVDERTRNNCFMLFPRGLSITWSEDPRFWTWKPLKEGSSDADTDTQIEVPSL 131
Query: 147 SQIWWFEVRGEVE--FCFPEGTYSLFFRLHLGRPLKRLGRRVYSSEHIHGWDIKPVRFQL 204
+ W E+ G++E + P TY + F + L P +GW + PV QL
Sbjct: 132 QNVCWLEIHGKLERSYLTPGVTYEVLFEVMLIDP-------------AYGWSV-PVNLQL 177
Query: 205 STSDGQQAQSKCYLTDP--GVWINHHVGDFVVKSSNELVKIQFAMVQIDCTHTKGGLCVD 262
DG Q K L + W+ VG+ V + +I+ +M + D K GL +
Sbjct: 178 KFPDGTVQQRKENLEEKIRMKWLELKVGE-VKTQQGQKGEIEISMFEYDGGLWKRGLLIK 236
Query: 263 SVAVKPQ 269
+ + P+
Sbjct: 237 GIKILPK 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,243,121
Number of extensions: 360747
Number of successful extensions: 1077
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 14
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)