Os02g0812500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os02g0812500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.31 | 0.61 | 5.68 | 4.18 | 0.143 | 446 | -1.98 | 933 | 0.121 | 18.8 | 15 | 90 | -- | -- |
| 172.17 | 0.616 | 3.38 | -0.634 | 0.126 | 3.91 | -2.01 | -- | 0.128 | 19.1 | 15 | 90 | -- | -- |
| 177.29 | 0.62 | 5.71 | 4.31 | 0.293 | 446 | -- | 934 | 0.125 | 14.8 | 15.11 | 69 | -- | -- |
| 178.88 | 0.627 | 3.38 | -0.574 | 0.285 | 4.19 | -- | -- | 0.131 | 14.9 | 15 | 90 | -- | -- |
| 182.27 | 0.629 | 5.74 | 4.33 | -- | 447 | -- | 936 | 0.113 | -- | 15.13 | 67 | -- | -- |
| 200.72 | 0.664 | 3.39 | -0.807 | 0.0799 | -- | -2.23 | -- | 0.0852 | 20.1 | -- | -- | -- | -- |
| 212.85 | 0.683 | 3.39 | -0.734 | 0.239 | -- | -- | -- | 0.0889 | 15.7 | -- | -- | -- | -- |
| 183.54 | 0.634 | 3.38 | -0.59 | -- | 4.08 | -- | -- | 0.123 | -- | 15 | 90 | -- | -- |
| 187.38 | 0.641 | 3.36 | -- | 0.3 | 4.49 | -- | -- | 0.197 | 14.9 | 14.55 | 52 | -- | -- |
| 216.02 | 0.687 | 3.39 | -0.744 | -- | -- | -- | -- | 0.0826 | -- | -- | -- | -- | -- |
| 227.07 | 0.705 | 3.37 | -- | 0.254 | -- | -- | -- | 0.171 | 15.7 | -- | -- | -- | -- |
| 192.55 | 0.648 | 3.36 | -- | -- | 4.38 | -- | -- | 0.19 | -- | 15 | 90 | -- | -- |
| 230.63 | 0.709 | 3.37 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.04 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 10 |
| 2 | 164.45 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 6 | 165.44 | temperature | 15 | 10 | > th | dose independent | rect. | 9 | 23 |
| 10 | 165.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 4 |
| 14 | 166.35 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 6 |
| 15 | 166.49 | temperature | 15 | 720 | > th | dose independent | rect. | 11 | 9 |
| 18 | 166.88 | temperature | 15 | 90 | > th | dose independent | sin | 18 | NA |
| 20 | 167.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 22 | 167.23 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 1 |
| 24 | 167.35 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 25 | 167.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 6 |
| 26 | 167.51 | temperature | 15 | 270 | > th | dose independent | sin | 7 | NA |
| 30 | 167.55 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 34 | 167.80 | temperature | 15 | 10 | > th | dose independent | sin | 7 | NA |
| 68 | 167.80 | temperature | 15 | 10 | > th | dose independent | sin | 1 | NA |
| 92 | 168.08 | temperature | 15 | 270 | > th | dose independent | sin | 21 | NA |
| 100 | 168.21 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 107 | 168.32 | temperature | 15 | 720 | > th | dose independent | rect. | 15 | 8 |
| 117 | 168.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 136 | 168.88 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 5 |
| 173 | 169.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 181 | 169.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 183 | 169.81 | temperature | 15 | 10 | > th | dose independent | rect. | 7 | 23 |
| 195 | 169.97 | temperature | 15 | 720 | > th | dose independent | rect. | 11 | 12 |
| 209 | 170.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 210 | 170.16 | temperature | 15 | 720 | > th | dose independent | rect. | 7 | 14 |
| 212 | 170.20 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 3 |
| 214 | 170.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 218 | 170.24 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 228 | 170.33 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 2 |
| 241 | 170.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 246 | 170.62 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 255 | 170.67 | temperature | 15 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 272 | 170.77 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 274 | 170.79 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 281 | 170.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 292 | 170.93 | temperature | 15 | 1440 | < th | dose dependent | sin | 22 | NA |
| 293 | 170.94 | temperature | 15 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 302 | 170.99 | temperature | 15 | 1440 | < th | dose independent | sin | 21 | NA |
| 328 | 171.19 | temperature | 15 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 335 | 171.25 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 10 |
| 344 | 171.31 | temperature | 15 | 90 | > th | dose independent | no | NA | NA |
| 346 | 171.31 | temperature | 15 | 90 | < th | dose independent | sin | 7 | NA |
| 394 | 171.31 | temperature | 15 | 90 | < th | dose independent | no | NA | NA |
| 396 | 171.31 | temperature | 15 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 398 | 171.31 | temperature | 15 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 401 | 171.31 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 532 | 171.31 | temperature | 15 | 270 | < th | dose independent | rect. | 24 | 10 |
| 982 | 171.31 | temperature | 15 | 90 | < th | dose dependent | sin | 7 | NA |