Os01g0158400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose-binding like domain containing protein.
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Os01g0158400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose-binding like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.41 | 0.478 | 9.06 | -1.5 | 1.84 | 1.26 | -1.19 | 7.07 | -0.553 | 10.3 | 0.1101 | 4286 | -- | -- |
| 116.42 | 0.503 | 8.83 | -0.549 | 1.91 | 0.774 | -0.793 | -- | -0.153 | 10.3 | 13.72 | 28857 | -- | -- |
| 106.78 | 0.481 | 9.06 | -1.56 | 1.91 | 1.27 | -- | 7.18 | -0.564 | 10.3 | 0.03 | 7250 | -- | -- |
| 118.72 | 0.507 | 8.82 | -0.478 | 1.94 | 0.785 | -- | -- | -0.113 | 10.4 | 14.58 | 28908 | -- | -- |
| 173.77 | 0.617 | 8.94 | -0.548 | -- | -1.28 | -- | 0.927 | -0.43 | -- | 0.03 | 7250 | -- | -- |
| 131.33 | 0.537 | 8.87 | -0.381 | 1.91 | -- | -0.793 | -- | -0.329 | 10.4 | -- | -- | -- | -- |
| 133.87 | 0.542 | 8.87 | -0.412 | 1.92 | -- | -- | -- | -0.331 | 10.4 | -- | -- | -- | -- |
| 179.3 | 0.626 | 8.94 | -0.515 | -- | -1.28 | -- | -- | -0.419 | -- | 0.03 | 7250 | -- | -- |
| 124.81 | 0.52 | 8.81 | -- | 1.91 | 0.671 | -- | -- | -0.0753 | 10.4 | 14.64 | 28846 | -- | -- |
| 358.7 | 0.885 | 8.92 | -0.444 | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
| 138.34 | 0.55 | 8.86 | -- | 1.92 | -- | -- | -- | -0.285 | 10.4 | -- | -- | -- | -- |
| 186.3 | 0.638 | 8.93 | -- | -- | -1.27 | -- | -- | -0.361 | -- | 0.03 | 7250 | -- | -- |
| 363.9 | 0.89 | 8.91 | -- | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.32 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 3 | 100.71 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 10 | 100.92 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 25 | 101.33 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 36 | 101.60 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 45 | 101.66 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 62 | 101.73 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 72 | 101.76 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 97 | 102.07 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 137 | 102.25 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 144 | 102.37 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 148 | 102.42 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 152 | 102.49 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 154 | 102.50 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 161 | 102.51 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 165 | 102.55 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 174 | 102.79 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 177 | 102.82 | humidity | 50.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 181 | 102.85 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 183 | 102.85 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 15 |
| 184 | 102.89 | humidity | 50.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 185 | 102.90 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 195 | 102.90 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 196 | 102.90 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 197 | 102.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 198 | 102.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 20 |
| 205 | 102.92 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 23 |
| 210 | 102.94 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 215 | 102.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 220 | 102.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 20 |
| 223 | 102.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 230 | 102.97 | radiation | 1.0 | 43200 | < th | dose dependent | no | NA | NA |
| 302 | 103.02 | wind | 5.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 305 | 103.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 312 | 103.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 337 | 103.06 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 344 | 103.06 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 353 | 103.07 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 20 | NA |
| 359 | 103.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 380 | 103.09 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 394 | 103.10 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 12 |
| 412 | 103.11 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 423 | 103.12 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 486 | 103.16 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 521 | 103.18 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 523 | 103.18 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 524 | 103.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 525 | 103.18 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 5 |
| 606 | 103.25 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 629 | 103.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 647 | 103.35 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 657 | 103.38 | wind | 1.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 659 | 103.38 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 7 | 12 |
| 671 | 103.38 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 697 | 103.42 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 760 | 103.52 | radiation | 1.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 762 | 103.52 | radiation | 1.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 774 | 103.54 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 776 | 103.55 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 795 | 103.58 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 807 | 103.58 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 831 | 103.60 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 858 | 103.64 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 930 | 103.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 935 | 103.70 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 11 |
| 940 | 103.71 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 960 | 103.71 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 15 | 4 |