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Os04g0571300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.19 (0.0217) R2 : 0.723
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.883 (0.0529) R2dC : 0.18 R2C : 0.272
β3 : -1.69 (0.0639) R2dE : 0.44 R2E : 0.538
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0456) R2dN8 : 0.00676 R2N8 : 0.00862
σ : 0.406
deviance : 76.08
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_____
C
peak time of C : 22.5
E
wheather : precipitation
threshold : 0.2298
memory length : 272
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 19

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.86 0.395 8.2 -0.438 0.886 -1.77 -0.19 -0.217 0.0811 22.7 0.2258 285 17 19
70.95 0.392 8.2 -0.444 0.887 -1.77 -0.175 -- 0.0793 22.7 0.2844 285 17 19
71 0.392 8.2 -0.431 0.889 -1.76 -- -0.191 0.0822 22.7 0.314 285 17 19
71.07 0.393 8.2 -0.436 0.891 -1.75 -- -- 0.0809 22.7 0.3131 285 17 19
96.11 0.457 8.17 -0.378 -- -1.77 -- -0.281 0.112 -- 0.9308 457 17.5 18.5
120.91 0.515 8.21 -0.341 1.65 -- 0.343 -- 0.174 19.6 -- -- -- --
121.24 0.516 8.21 -0.349 1.65 -- -- -- 0.174 19.6 -- -- -- --
96.22 0.457 8.17 -0.382 -- -1.77 -- -- 0.111 -- 0.952 458 17.5 18.5
76.08 0.406 8.19 -- 0.883 -1.69 -- -- 0.129 22.5 0.2298 272 17.2 19
267.62 0.764 8.17 -0.372 -- -- -- -- 0.149 -- -- -- -- --
124.45 0.522 8.2 -- 1.65 -- -- -- 0.213 19.6 -- -- -- --
100.33 0.467 8.18 -- -- -1.75 -- -- 0.122 -- 0.9786 457 17.5 18.5
271.26 0.769 8.16 -- -- -- -- -- 0.191 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.40 precipitation 0.1 270 < th dose independent rect. 17 19
2 71.40 precipitation 0.1 270 < th dose dependent rect. 17 19
7 72.46 wind 9.0 270 < th dose independent rect. 12 5
9 72.99 temperature 10.0 270 > th dose independent rect. 12 5
11 72.99 atmosphere 1015.0 270 < th dose independent rect. 12 5
12 72.99 temperature 10.0 270 > th dose independent rect. 17 19
14 73.17 wind 1.0 270 > th dose independent rect. 12 5
15 73.19 atmosphere 995.0 270 > th dose independent rect. 18 18
22 73.51 wind 9.0 270 < th dose independent rect. 17 19
23 73.52 precipitation 0.1 270 < th dose independent rect. 12 5
24 73.52 precipitation 0.1 270 < th dose dependent rect. 12 5
27 73.64 atmosphere 995.0 270 > th dose independent rect. 12 5
29 73.68 wind 9.0 270 < th dose independent rect. 12 19
32 73.96 precipitation 0.1 270 < th dose independent rect. 7 5
33 73.96 radiation 20.0 270 < th dose independent rect. 22 10
34 73.96 precipitation 0.1 270 < th dose dependent rect. 7 5
36 74.03 temperature 10.0 270 > th dose independent rect. 7 5
37 74.03 atmosphere 995.0 270 > th dose independent rect. 7 5
38 74.03 atmosphere 1015.0 270 < th dose independent rect. 7 5
39 74.03 temperature 10.0 270 > th dose independent rect. 12 19
40 74.06 radiation 40.0 270 < th dose dependent rect. 22 10
41 74.07 humidity 70.0 270 > th dose independent rect. 22 9
44 74.12 precipitation 0.1 270 < th dose independent rect. 7 15
45 74.12 precipitation 0.1 270 < th dose dependent rect. 7 15
46 74.16 radiation 1.0 270 > th dose independent rect. 7 5
57 74.41 wind 9.0 270 < th dose independent rect. 7 5
60 74.48 temperature 10.0 270 > th dose independent rect. 22 9
61 74.48 temperature 30.0 270 < th dose independent rect. 22 9
62 74.48 humidity 50.0 270 > th dose independent rect. 22 9
64 74.48 atmosphere 995.0 270 > th dose independent rect. 22 9
66 74.48 temperature 10.0 270 > th dose independent rect. 7 15
67 74.51 wind 9.0 270 < th dose independent rect. 22 9
77 74.86 humidity 50.0 270 > th dose independent rect. 17 19
83 75.20 radiation 40.0 90 < th dose independent rect. 13 6
86 75.27 humidity 50.0 270 > th dose dependent rect. 22 9
91 75.49 atmosphere 995.0 270 > th dose independent rect. 12 19
92 75.64 humidity 50.0 270 > th dose independent rect. 7 5
106 76.11 wind 1.0 270 > th dose independent rect. 7 5
131 76.45 precipitation 0.1 270 < th dose independent rect. 12 19
132 76.45 precipitation 0.1 270 < th dose dependent rect. 12 19
143 76.51 precipitation 0.1 270 < th dose independent rect. 22 9
146 76.51 precipitation 0.1 270 < th dose dependent rect. 22 9
149 76.56 radiation 1.0 270 > th dose independent rect. 17 20
166 76.90 humidity 90.0 270 < th dose independent rect. 12 5
173 77.05 wind 9.0 270 < th dose independent rect. 7 15
177 77.11 radiation 40.0 10 < th dose independent rect. 13 7
189 77.32 atmosphere 1015.0 270 < th dose independent rect. 22 9
242 77.97 radiation 1.0 10 > th dose independent rect. 9 5
244 77.98 atmosphere 995.0 270 > th dose dependent rect. 12 5
253 78.23 wind 9.0 270 < th dose independent rect. 2 15
258 78.28 wind 1.0 270 > th dose independent rect. 8 3
268 78.44 atmosphere 1015.0 270 < th dose independent rect. 12 19
270 78.53 temperature 10.0 270 > th dose dependent rect. 12 5
273 78.58 radiation 40.0 90 < th dose independent rect. 13 19
306 78.77 atmosphere 1015.0 270 < th dose independent rect. 7 15
323 78.86 radiation 1.0 270 > th dose independent rect. 12 5
324 78.86 radiation 40.0 10 < th dose independent rect. 13 20
360 79.21 temperature 30.0 270 < th dose independent rect. 7 5
361 79.21 temperature 10.0 270 > th dose independent rect. 17 9
362 79.21 radiation 20.0 270 < th dose independent rect. 17 9
365 79.21 temperature 10.0 270 > th dose independent rect. 2 15
366 79.21 atmosphere 1015.0 270 < th dose independent rect. 2 15
371 79.26 precipitation 0.1 270 < th dose independent rect. 17 9
373 79.26 precipitation 0.1 270 < th dose dependent rect. 17 9
374 79.27 wind 9.0 270 < th dose independent rect. 17 9
399 79.52 temperature 30.0 270 < th dose independent rect. 18 18
401 79.53 wind 1.0 270 > th dose independent rect. 12 18
409 79.59 wind 1.0 270 > th dose independent rect. 17 9
415 79.72 temperature 30.0 270 < th dose independent rect. 8 2
416 79.72 precipitation 0.1 10 < th dose independent rect. 20 17
417 79.72 precipitation 0.1 10 < th dose dependent rect. 20 17
423 79.77 humidity 50.0 270 > th dose independent rect. 17 9
438 79.85 radiation 40.0 10 < th dose dependent rect. 13 20
482 80.15 radiation 40.0 270 < th dose dependent rect. 17 9
487 80.19 temperature 10.0 10 > th dose independent rect. 9 5
489 80.19 atmosphere 995.0 10 > th dose independent rect. 9 5
491 80.19 atmosphere 1015.0 10 < th dose independent rect. 9 5
492 80.19 precipitation 0.1 10 < th dose independent rect. 9 5
493 80.19 temperature 10.0 10 > th dose independent rect. 14 19
494 80.19 precipitation 0.1 10 < th dose dependent rect. 9 5
512 80.40 atmosphere 1015.0 270 < th dose independent rect. 18 18
536 80.55 wind 1.0 270 > th dose independent rect. 7 15
549 80.64 atmosphere 995.0 270 > th dose independent rect. 17 9
558 80.73 wind 9.0 10 < th dose independent rect. 14 19
572 80.85 temperature 10.0 10 > th dose independent rect. 13 7
574 80.85 atmosphere 1010.0 10 < th dose independent rect. 13 7
577 80.85 temperature 10.0 10 > th dose independent rect. 20 17
578 80.85 atmosphere 995.0 10 > th dose independent rect. 20 17
583 80.89 wind 1.0 10 > th dose independent rect. 13 7
587 80.91 wind 9.0 10 < th dose independent rect. 9 5
590 80.95 atmosphere 995.0 270 > th dose independent rect. 2 15
618 81.04 wind 9.0 10 < th dose independent rect. 13 7
623 81.05 atmosphere 995.0 10 > th dose independent rect. 14 19
659 81.21 precipitation 0.1 10 < th dose independent rect. 13 7
660 81.21 precipitation 0.1 10 < th dose dependent rect. 13 7
666 81.25 atmosphere 995.0 270 > th dose independent rect. 7 15
689 81.39 wind 9.0 10 < th dose independent rect. 20 17
720 81.62 precipitation 0.1 270 < th dose independent rect. 2 15
721 81.62 precipitation 0.1 270 < th dose dependent rect. 2 15
756 81.88 wind 1.0 10 > th dose independent rect. 9 5
758 81.89 temperature 10.0 1440 > th dose independent rect. 10 5
762 81.89 temperature 10.0 1440 > th dose independent rect. 15 19
838 82.47 atmosphere 995.0 10 > th dose independent rect. 14 6
839 82.48 radiation 1.0 270 > th dose independent rect. 12 18
846 82.51 humidity 90.0 10 < th dose independent rect. 9 5
863 82.63 radiation 20.0 10 < th dose independent rect. 1 18
871 82.68 humidity 50.0 270 > th dose independent rect. 12 19
873 82.70 humidity 50.0 270 > th dose independent rect. 12 5
874 82.70 temperature 10.0 1440 > th dose independent rect. 14 7
877 82.70 temperature 10.0 1440 > th dose independent rect. 21 17
880 82.70 atmosphere 995.0 1440 > th dose independent rect. 21 17
909 82.90 atmosphere 1015.0 10 < th dose independent rect. 14 19
934 83.09 wind 1.0 270 > th dose independent rect. 17 19