BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0496500 Os08g0496500|AK108510
(205 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0496500 Histone-fold domain containing protein 231 4e-61
Os09g0480700 Similar to Transcription factor Hap5a-like pro... 213 6e-56
Os02g0170500 Histone-fold domain containing protein 178 3e-45
Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor ... 172 1e-43
Os03g0251350 Histone-fold domain containing protein 162 1e-40
Os08g0206500 Similar to Beta-expansin precursor 145 3e-35
Os04g0683400 100 1e-21
Os01g0580400 Histone-fold domain containing protein 94 5e-20
Os01g0102400 Histone-fold domain containing protein 93 1e-19
Os01g0346900 Histone-fold domain containing protein 91 5e-19
Os10g0191900 Histone-fold domain containing protein 72 3e-13
AK119652 71 5e-13
Os05g0304800 Histone-fold domain containing protein 71 7e-13
>Os08g0496500 Histone-fold domain containing protein
Length = 205
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/135 (85%), Positives = 116/135 (85%)
Query: 71 NFWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTH 130
NFWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTH
Sbjct: 71 NFWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTH 130
Query: 131 RGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEXXXXXXXXXXXXXXXXXXXG 190
RGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDE G
Sbjct: 131 RGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEAKDAEAAAAVAAGIPHPAAG 190
Query: 191 LPATDPMAYYYVQPQ 205
LPATDPMAYYYVQPQ
Sbjct: 191 LPATDPMAYYYVQPQ 205
>Os09g0480700 Similar to Transcription factor Hap5a-like protein
Length = 168
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/135 (80%), Positives = 112/135 (82%), Gaps = 1/135 (0%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FWAEQYREIE TTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR
Sbjct: 34 FWAEQYREIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 93
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEXXXXXXXXXXXXXXX-XXXXG 190
GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRD+ G
Sbjct: 94 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDDAKDADAAAAAAAAGIPRPAAG 153
Query: 191 LPATDPMAYYYVQPQ 205
+PATDP+AYYYV Q
Sbjct: 154 VPATDPLAYYYVPQQ 168
>Os02g0170500 Histone-fold domain containing protein
Length = 259
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 100/139 (71%), Gaps = 13/139 (9%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FWA Q EIE TTDFKNH+LPLARIKKIMKADEDVRMI+AEAPVVFA+ACE+FILELT R
Sbjct: 87 FWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLR 146
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEXXXXXXXXXXXXXXXXXXXGL 191
W H EENKRRTLQK+DIAAAI RT+++DFLVDIVPRDE GL
Sbjct: 147 SWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDE--------MKEEGLGLPRVGL 198
Query: 192 P-----ATDPMAYYYVQPQ 205
P A D YYYV Q
Sbjct: 199 PPNVGGAADTYPYYYVPAQ 217
>Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC
Length = 250
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/99 (79%), Positives = 91/99 (91%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FWAE+ +IE TTDFKNH+LPLARIKKIMKADEDVRMI+AEAPV+FA+ACE+FILELT R
Sbjct: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDE 170
W H EENKRRTLQK+DIAAAI RT+++DFLVDIVPRD+
Sbjct: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDD 181
>Os03g0251350 Histone-fold domain containing protein
Length = 246
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 90/101 (89%), Gaps = 2/101 (1%)
Query: 72 FWAEQYREIEHTT--DFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELT 129
FWA Q +E E + DFKNH LPLARIKKIMKADEDVRMI+AEAPV+FA+ACE+FILELT
Sbjct: 49 FWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELT 108
Query: 130 HRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDE 170
R W HAEENKRRTLQ++D+AAAIART+VFDFLVDIVPR+E
Sbjct: 109 IRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREE 149
>Os08g0206500 Similar to Beta-expansin precursor
Length = 484
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 81/99 (81%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FWA+Q E+E T+FK NLPLARIKKIMKADEDV+MIA EAP +FA+ACEMFIL++T R
Sbjct: 317 FWADQMAEVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLR 376
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDE 170
W H EE +RRTLQ+SD+ A I +T++FDFLVDI+ D+
Sbjct: 377 SWQHTEEGRRRTLQRSDVEAVIKKTDIFDFLVDIITDDK 415
>Os04g0683400
Length = 125
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 61/95 (64%), Gaps = 14/95 (14%)
Query: 89 HNLPLARIKKIMK--------------ADEDVRMIAAEAPVVFARACEMFILELTHRGWA 134
H LPLARIKKIMK RMI+ EAPVVF++ACE+FI ELT R WA
Sbjct: 22 HALPLARIKKIMKRSAGDSSVVDGGGGGGGGARMISGEAPVVFSKACELFIAELTRRAWA 81
Query: 135 HAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRD 169
E KRRT+ K D+AAA+ T++FDFLVD+V D
Sbjct: 82 ATLEGKRRTVHKEDVAAAVQNTDLFDFLVDVVTAD 116
>Os01g0580400 Histone-fold domain containing protein
Length = 442
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FW ++ +EIE T DF H +P+AR+KKI+ + + M+ + P ++ CE+F+ EL R
Sbjct: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVR 84
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEXXXXXXXXXXXXXXXXXXXGL 191
WA A+ + R + +DIA AIA TE +DFLVDI+
Sbjct: 85 AWASAQSHNRCIILDTDIAKAIASTESYDFLVDILHNHRVKHKSTPCSTLTTKRCRLVDQ 144
Query: 192 PATDPMAYYYVQPQ 205
P+T M Y + PQ
Sbjct: 145 PSTSHMPYQHQLPQ 158
>Os01g0102400 Histone-fold domain containing protein
Length = 421
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 62/95 (65%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FW ++ +EIE T DF H +P+AR+KKI + + M++ + P ++ CE+F+ EL R
Sbjct: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 166
WA A+ + R + +DIA AIA TE +DFLVDI+
Sbjct: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
>Os01g0346900 Histone-fold domain containing protein
Length = 444
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FW ++ +EIE T DF H +P+AR+KKI+ + + M+ + P ++ CE+F+ EL R
Sbjct: 25 FWRDRQKEIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAAR 84
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 166
WA A+ + R + DIA A+A TE +DFLVDI+
Sbjct: 85 AWACAQSHNRCIILDMDIAEAVASTESYDFLVDIL 119
>Os10g0191900 Histone-fold domain containing protein
Length = 335
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FW +IE + + LP++R+K I+ A E M++A+ P + CE+F+ EL R
Sbjct: 34 FWRMSQEQIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILR 93
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 166
W A + R + +DIA AI TE + FL ++V
Sbjct: 94 AWVCANSHNREIILGTDIAEAITTTESYHFLANVV 128
>AK119652
Length = 335
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FW +IE + LP++R+K I+ A E M++A+ P + CE+F+ EL R
Sbjct: 34 FWRMSQEQIEESAGNDELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILR 93
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 166
W A + R + +DIA AI TE + FL ++V
Sbjct: 94 AWVCANSHNREIILGTDIAEAITTTESYHFLANVV 128
>Os05g0304800 Histone-fold domain containing protein
Length = 327
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
FW +IE + H LP+ +K +++ D M++A+ P + CE+F+ ELT R
Sbjct: 34 FWRRSQEQIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQELTLR 93
Query: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 166
W A + R + +DIA AI TE + FL +++
Sbjct: 94 AWVCANSHNRDIILGTDIAEAITTTESYHFLGNVL 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,995,943
Number of extensions: 119782
Number of successful extensions: 269
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 13
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)