Os09g0480700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor Hap5a-like protein.
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Os09g0480700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor Hap5a-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.38 | 0.267 | 10.1 | 0.443 | 0.335 | 0.88 | 0.17 | 0.37 | 0.0304 | 9.9 | 25.7 | 214 | -- | -- |
| 32.57 | 0.266 | 10.1 | 0.505 | 0.337 | 0.851 | 0.135 | -- | 0.0417 | 9.82 | 25.72 | 210 | -- | -- |
| 32.49 | 0.265 | 10.1 | 0.454 | 0.333 | 0.874 | -- | 0.332 | 0.0312 | 9.84 | 25.7 | 217 | -- | -- |
| 32.65 | 0.266 | 10.1 | 0.509 | 0.337 | 0.851 | -- | -- | 0.0425 | 9.8 | 25.7 | 210 | -- | -- |
| 37.55 | 0.285 | 10.1 | 0.451 | -- | 0.896 | -- | 0.361 | 0.0407 | -- | 26.56 | 383 | -- | -- |
| 43.12 | 0.308 | 10.1 | 0.286 | 0.364 | -- | 0.128 | -- | -0.139 | 8.08 | -- | -- | -- | -- |
| 43.17 | 0.308 | 10.1 | 0.29 | 0.364 | -- | -- | -- | -0.139 | 8.06 | -- | -- | -- | -- |
| 37.73 | 0.286 | 10.1 | 0.512 | -- | 0.866 | -- | -- | 0.0533 | -- | 26.69 | 386 | -- | -- |
| 38.7 | 0.29 | 10.1 | -- | 0.343 | 0.636 | -- | -- | -0.0542 | 9.24 | 25.7 | 189 | -- | -- |
| 50.43 | 0.332 | 10.1 | 0.293 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 45.38 | 0.315 | 10.1 | -- | 0.366 | -- | -- | -- | -0.172 | 8 | -- | -- | -- | -- |
| 44.31 | 0.31 | 10.1 | -- | -- | 0.698 | -- | -- | -0.0723 | -- | 32.07 | 462 | -- | -- |
| 52.7 | 0.339 | 10.1 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 2 | 32.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 13 | 32.78 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 14 | 32.80 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 17 | 32.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 20 | 32.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 21 | 32.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 58 | 33.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 67 | 33.20 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 69 | 33.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 99 | 33.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 121 | 33.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 129 | 33.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 161 | 33.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 170 | 33.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 179 | 33.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 224 | 33.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 295 | 33.94 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 358 | 34.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 600 | 34.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 635 | 34.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 724 | 34.82 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 744 | 34.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 786 | 34.91 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 859 | 35.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 871 | 35.06 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 950 | 35.20 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 22 |