FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0580400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.1 (0.0235) R2 : 0.0226
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0495) R2dN8 : 0.0292 R2N8 : 0.0226
σ : 0.443
deviance : 89.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.37 0.434 3.11 -0.0703 0.154 0.824 -0.562 -1.96 0.186 17.6 0.6999 11 -- --
86.81 0.434 3.11 -0.0504 0.152 0.605 -0.471 -- 0.165 17.6 0.6 11 -- --
86.13 0.432 3.11 -0.0678 0.15 0.805 -- -1.81 0.183 17.9 0.6961 11 -- --
87.3 0.435 3.1 -0.0615 0.135 0.556 -- -- 0.177 17.7 0.7 11 -- --
87.25 0.435 3.11 -0.0684 -- 0.705 -- -1.62 0.177 -- 0.6985 11 -- --
88.86 0.442 3.11 -0.0412 0.0972 -- -0.493 -- 0.16 17.7 -- -- -- --
89.43 0.443 3.11 -0.039 0.0966 -- -- -- 0.158 18.5 -- -- -- --
88.21 0.437 3.1 -0.0632 -- 0.486 -- -- 0.171 -- 0.6803 11 -- --
87.4 0.435 3.1 -- 0.135 0.545 -- -- 0.183 17.7 0.6861 11 -- --
89.92 0.443 3.11 -0.0414 -- -- -- -- 0.156 -- -- -- -- --
89.47 0.442 3.11 -- 0.0971 -- -- -- 0.162 18.5 -- -- -- --
88.31 0.438 3.1 -- -- 0.476 -- -- 0.178 -- 0.663 11 -- --
89.96 0.443 3.1 -- -- -- -- -- 0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.58 wind 1.0 10 < th dose independent rect. 4 18
2 81.66 wind 1.0 10 < th dose independent rect. 4 14
7 81.69 wind 1.0 10 < th dose independent rect. 4 12
9 81.71 wind 1.0 10 < th dose independent rect. 4 10
11 81.74 wind 1.0 10 < th dose independent rect. 4 6
15 81.91 wind 1.0 10 < th dose dependent rect. 4 18
16 82.02 wind 1.0 10 < th dose dependent rect. 4 12
22 82.04 wind 1.0 10 < th dose dependent rect. 4 10
24 82.08 wind 1.0 10 < th dose dependent rect. 4 6
62 83.06 wind 1.0 10 < th dose dependent sin 23 NA
75 83.30 temperature 25.0 90 < th dose independent rect. 3 8
82 83.34 temperature 25.0 270 < th dose independent rect. 24 10
85 83.38 wind 1.0 10 < th dose independent sin 23 NA
88 83.54 wind 3.0 10 < th dose dependent rect. 4 2
89 83.56 wind 1.0 10 > th dose independent sin 23 NA
106 83.78 wind 1.0 10 > th dose independent rect. 6 10
112 83.89 wind 1.0 30 < th dose dependent rect. 4 22
119 84.00 temperature 10.0 30 > th dose dependent rect. 16 14
121 84.08 temperature 25.0 270 > th dose independent rect. 24 9
124 84.12 radiation 1.0 30 > th dose independent rect. 16 14
129 84.17 temperature 25.0 90 > th dose independent sin 6 NA
138 84.23 temperature 25.0 90 < th dose independent sin 6 NA
145 84.27 temperature 25.0 270 > th dose dependent rect. 24 8
147 84.29 temperature 10.0 30 > th dose dependent rect. 6 10
160 84.40 temperature 25.0 270 > th dose dependent rect. 22 11
164 84.48 temperature 20.0 30 > th dose independent rect. 4 2
182 84.57 temperature 25.0 720 > th dose dependent rect. 21 1
183 84.58 temperature 20.0 10 > th dose dependent rect. 5 1
199 84.64 temperature 25.0 90 > th dose independent rect. 1 12
202 84.68 temperature 25.0 30 > th dose dependent rect. 16 5
219 84.77 temperature 25.0 90 > th dose independent rect. 22 15
227 84.80 atmosphere 1015.0 10 < th dose dependent rect. 4 2
242 84.86 temperature 25.0 10 > th dose dependent sin 7 NA
251 84.87 humidity 50.0 30 > th dose independent rect. 16 14
258 84.90 temperature 10.0 1440 > th dose independent rect. 7 10
261 84.90 temperature 10.0 1440 > th dose independent rect. 17 14
264 84.90 radiation 40.0 1440 < th dose independent rect. 17 14
283 84.95 humidity 90.0 90 > th dose independent rect. 4 1
286 84.95 wind 9.0 10 < th dose independent rect. 6 10
308 84.99 wind 9.0 30 < th dose independent rect. 16 14
311 85.01 radiation 10.0 10 < th dose independent rect. 4 2
320 85.02 temperature 10.0 30 > th dose dependent rect. 6 8
322 85.03 humidity 50.0 30 > th dose independent rect. 6 10
324 85.03 atmosphere 995.0 30 > th dose independent rect. 16 14
328 85.04 humidity 80.0 10 > th dose independent rect. 4 2
333 85.05 temperature 25.0 30 > th dose dependent rect. 16 10
346 85.07 precipitation 0.1 30 < th dose independent rect. 16 14
347 85.07 precipitation 0.1 30 < th dose dependent rect. 16 14
348 85.08 temperature 25.0 90 < th dose independent rect. 3 3
351 85.08 radiation 10.0 10 < th dose independent rect. 16 14
364 85.12 temperature 25.0 90 < th dose independent rect. 4 1
368 85.12 temperature 10.0 30 > th dose independent rect. 6 10
370 85.12 humidity 80.0 720 > th dose independent rect. 22 10
371 85.12 atmosphere 1015.0 30 < th dose independent rect. 6 10
372 85.12 precipitation 0.1 30 < th dose independent rect. 6 10
373 85.12 temperature 10.0 30 > th dose independent rect. 16 14
379 85.12 precipitation 0.1 30 < th dose dependent rect. 6 10
388 85.14 atmosphere 1005.0 30 > th dose dependent rect. 14 7
391 85.15 wind 1.0 10 > th dose independent rect. 6 8
426 85.20 humidity 50.0 10 > th dose dependent rect. 4 2
433 85.21 temperature 25.0 90 > th dose independent rect. 4 9
436 85.21 temperature 20.0 30 > th dose independent rect. 16 14
437 85.21 wind 9.0 10 < th dose independent rect. 6 22
444 85.22 radiation 30.0 10 < th dose dependent rect. 4 2
446 85.22 radiation 10.0 10 < th dose dependent rect. 4 3
450 85.23 atmosphere 995.0 30 > th dose independent rect. 6 10
465 85.26 wind 7.0 10 < th dose independent rect. 4 2
474 85.27 temperature 10.0 10 > th dose independent rect. 4 2
476 85.27 temperature 30.0 10 < th dose independent rect. 4 2
477 85.27 humidity 50.0 10 > th dose independent rect. 4 2
480 85.27 atmosphere 995.0 10 > th dose independent rect. 4 2
481 85.27 atmosphere 1010.0 10 < th dose independent rect. 4 2
488 85.27 temperature 10.0 10 > th dose independent rect. 6 22
499 85.28 temperature 10.0 30 > th dose dependent rect. 14 16
501 85.29 precipitation 0.1 10 < th dose independent rect. 4 2
504 85.29 precipitation 0.1 10 < th dose dependent rect. 4 2
518 85.32 precipitation 0.1 10 < th dose independent rect. 6 22
522 85.32 precipitation 0.1 10 < th dose dependent rect. 6 22
545 85.34 temperature 30.0 30 < th dose independent rect. 16 14
549 85.34 radiation 40.0 270 < th dose dependent rect. 12 13
563 85.36 radiation 40.0 10 < th dose dependent rect. 16 14
564 85.37 temperature 25.0 270 > th dose independent rect. 16 1
569 85.37 precipitation 0.1 90 < th dose independent rect. 6 21
576 85.37 precipitation 0.1 90 < th dose dependent rect. 6 21
581 85.38 radiation 1.0 30 > th dose independent rect. 6 10
592 85.39 atmosphere 1005.0 30 > th dose independent rect. 3 18
625 85.42 temperature 25.0 30 > th dose dependent rect. 16 3
648 85.44 temperature 25.0 270 > th dose dependent rect. 13 8
669 85.46 radiation 20.0 90 < th dose dependent rect. 3 9
705 85.50 radiation 10.0 270 > th dose independent rect. 16 2
710 85.50 atmosphere 1005.0 30 > th dose independent rect. 14 7
744 85.52 radiation 10.0 10 < th dose independent rect. 13 17
748 85.52 temperature 25.0 10 > th dose dependent rect. 22 16
757 85.53 atmosphere 995.0 10 > th dose independent rect. 6 22
758 85.53 temperature 25.0 270 > th dose dependent rect. 16 1
761 85.53 radiation 1.0 270 < th dose dependent rect. 11 14
774 85.54 radiation 40.0 30 < th dose independent rect. 11 19
796 85.57 humidity 80.0 720 > th dose independent rect. 21 3
802 85.57 radiation 10.0 10 < th dose dependent rect. 4 13
808 85.58 wind 1.0 90 > th dose independent rect. 6 21
846 85.62 wind 5.0 10 < th dose independent rect. 12 15
855 85.63 atmosphere 1010.0 30 < th dose independent rect. 16 14
866 85.64 humidity 80.0 720 < th dose independent rect. 22 9
867 85.64 humidity 60.0 30 > th dose independent rect. 14 16
928 85.68 radiation 30.0 270 > th dose independent rect. 14 18
938 85.69 temperature 30.0 90 < th dose dependent rect. 3 8
948 85.70 wind 1.0 30 > th dose independent rect. 17 23
949 85.70 atmosphere 995.0 720 > th dose dependent rect. 21 3
982 85.73 radiation 10.0 270 > th dose dependent rect. 16 15