Os01g0102400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os01g0102400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.09 | 0.661 | 6.55 | -0.223 | 0.718 | 4.78 | 2.5 | -0.817 | -0.906 | 9.71 | 7.734 | 774 | -- | -- |
| 198.47 | 0.656 | 6.53 | -0.0862 | 0.71 | 4.76 | 2.63 | -- | -0.87 | 9.81 | 6.216 | 787 | -- | -- |
| 221.15 | 0.693 | 6.53 | -0.125 | 0.731 | 4.72 | -- | -0.946 | -0.883 | 9.84 | 3.287 | 783 | -- | -- |
| 223.58 | 0.696 | 6.52 | 0.0411 | 0.656 | 4.56 | -- | -- | -0.836 | 11.3 | 14.8 | 858 | -- | -- |
| 238.77 | 0.72 | 6.6 | -0.429 | -- | 4.18 | -- | -2.89 | -0.931 | -- | 12.75 | 875 | -- | -- |
| 493.85 | 1.04 | 6.39 | 1.17 | 0.341 | -- | -2.27 | -- | -0.127 | 21.1 | -- | -- | -- | -- |
| 510.63 | 1.06 | 6.39 | 1.26 | 0.398 | -- | -- | -- | -0.121 | 19.6 | -- | -- | -- | -- |
| 239.55 | 0.721 | 6.55 | -0.0702 | -- | 4.09 | -- | -- | -0.882 | -- | 13.78 | 1773 | -- | -- |
| 223.55 | 0.696 | 6.53 | -- | 0.649 | 4.61 | -- | -- | -0.85 | 11.3 | 14.6 | 860 | -- | -- |
| 519.12 | 1.06 | 6.38 | 1.25 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 552.17 | 1.1 | 6.42 | -- | 0.388 | -- | -- | -- | -0.261 | 19.8 | -- | -- | -- | -- |
| 239.66 | 0.721 | 6.55 | -- | -- | 4.06 | -- | -- | -0.869 | -- | 11.63 | 1773 | -- | -- |
| 560.31 | 1.1 | 6.41 | -- | -- | -- | -- | -- | -0.266 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 4 | 192.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 5 | 192.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 9 | 193.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 48 | 199.45 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 53 | 199.55 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 57 | 199.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 66 | 200.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 75 | 202.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 128 | 206.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 157 | 208.88 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 162 | 209.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 186 | 210.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 187 | 210.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 198 | 210.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 302 | 212.60 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 310 | 212.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 329 | 213.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 571 | 214.82 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |