BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0102400 Os01g0102400|J075015G12
(421 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63470.1 | chr5:25416037-25417084 REVERSE LENGTH=251 94 2e-19
AT1G56170.1 | chr1:21025118-21025717 FORWARD LENGTH=200 92 5e-19
AT3G48590.1 | chr3:18008893-18009938 REVERSE LENGTH=235 92 6e-19
AT1G08970.4 | chr1:2883144-2883839 FORWARD LENGTH=232 91 1e-18
AT1G54830.2 | chr1:20451672-20452325 FORWARD LENGTH=218 90 2e-18
AT5G27910.1 | chr5:9940736-9941299 REVERSE LENGTH=188 81 1e-15
AT5G50480.1 | chr5:20557856-20558464 REVERSE LENGTH=203 79 6e-15
AT5G50490.1 | chr5:20560610-20561170 REVERSE LENGTH=187 72 5e-13
AT5G38140.1 | chr5:15220377-15222025 REVERSE LENGTH=196 69 7e-12
AT5G50470.1 | chr5:20555120-20555758 REVERSE LENGTH=213 58 1e-08
>AT5G63470.1 | chr5:25416037-25417084 REVERSE LENGTH=251
Length = 250
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW +++EIE DF H +P+AR+KKI + + M+S + P +K CELF+ EL +R
Sbjct: 60 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIR 119
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQ 144
+W A+ + R + DIA AI T+ +DFLVDI+ K + S L +
Sbjct: 120 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGG---MVA 176
Query: 145 PSTSRPPYQH 154
P+ S PY +
Sbjct: 177 PAASGVPYYY 186
>AT1G56170.1 | chr1:21025118-21025717 FORWARD LENGTH=200
Length = 199
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW ++ +EIE T DF H +P+AR+KKI + + M+S + P +K CE+F+ EL +R
Sbjct: 58 FWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLR 117
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
AW + + R + DIA AI+ T+ +DFLVDI+
Sbjct: 118 AWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 152
>AT3G48590.1 | chr3:18008893-18009938 REVERSE LENGTH=235
Length = 234
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW +++EIE DF H +P+AR+KKI + + M+S + P +K CELF+ EL +R
Sbjct: 47 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIR 106
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQ 144
+W A+ + R + DIA AI T+ +DFLVDI+ K ++ +V
Sbjct: 107 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLG------GGMVVA 160
Query: 145 PSTSRPPYQH 154
P+ S PY +
Sbjct: 161 PTASGVPYYY 170
>AT1G08970.4 | chr1:2883144-2883839 FORWARD LENGTH=232
Length = 231
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 61/95 (64%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW ++ KEIE T DF H++P+AR+KKI + + M+S + P ++ CE+F+ EL +R
Sbjct: 62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLR 121
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
+W + + R + DIA A+ T+ +DFLVDI+
Sbjct: 122 SWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 156
>AT1G54830.2 | chr1:20451672-20452325 FORWARD LENGTH=218
Length = 217
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW + KEIE T DF H++P+AR+KKI + + M+S + P ++ CE+F+ EL +R
Sbjct: 52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLR 111
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
+W + + R + DIA A+ T+ +DFLVDI+
Sbjct: 112 SWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 146
>AT5G27910.1 | chr5:9940736-9941299 REVERSE LENGTH=188
Length = 187
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 12 RLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLS 71
+LP PK +Q+ FW KE+E DF H +P+ R+KKI M++ + P LS
Sbjct: 9 QLP-PKGNEQLKSFW---SKEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLS 64
Query: 72 KMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVD 117
K CE+F+ +L +R+W AQ R + +++ A+A T +DFL+D
Sbjct: 65 KACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLD 110
>AT5G50480.1 | chr5:20557856-20558464 REVERSE LENGTH=203
Length = 202
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 14 PTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKM 73
P + Q+ +W + ++ET DF +P+AR+KKI + M+S + P +K
Sbjct: 28 PMASSNPQLRNYWIE---QMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKA 84
Query: 74 CELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
CE+F+ +L +R+W A+ + R + +DI+ A+AS+ +YDFL+D++
Sbjct: 85 CEMFIVDLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVV 130
>AT5G50490.1 | chr5:20560610-20561170 REVERSE LENGTH=187
Length = 186
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 16 PKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCE 75
PK +Q+ FW K +E + H P++R+K+I M++ + P LSK CE
Sbjct: 12 PKDNEQLKSFW---SKGMEGDLNVKNHEFPISRIKRIMKFDPDVSMIAAEAPNLLSKACE 68
Query: 76 LFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVD 117
+FV +L +R+W AQ NR I +D+ ++ T +DFL D
Sbjct: 69 MFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRD 110
>AT5G38140.1 | chr5:15220377-15222025 REVERSE LENGTH=196
Length = 195
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 25 FWRDRQKEIETTKDFSEHA-IPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAV 83
FW ++++++ +F+ +P++R++KI S +S D+PA SK CE F+ E+ +
Sbjct: 51 FWNNQREQL---GNFAGQTHLPLSRVRKILKSDPEVKKISCDVPALFSKACEYFILEVTL 107
Query: 84 RAWASAQSHNRCIILDTDIAEAIASTESYDFLVD 117
RAW QS R I DI +A+ ++ +YDFL+D
Sbjct: 108 RAWMHTQSCTRETIRRCDIFQAVKNSGTYDFLID 141
>AT5G50470.1 | chr5:20555120-20555758 REVERSE LENGTH=213
Length = 212
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 3 QTLDVPRSLRLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMM 62
Q++ +P S LP P + Q M +W ++ D HA P+ R+KKI S M+
Sbjct: 28 QSMPLP-SYSLPLPYSPQ-MRNYW---IAQMGNATDVKHHAFPLTRIKKIMKSNPEVNMV 82
Query: 63 SFDMPAFLSKMCELFVQELAVRAW-----ASAQSHNRCIILD-TDIAEAIASTESYDFLV 116
+ + P +SK CE+ + +L +R+W Q+ R L +DI+ A + + FL
Sbjct: 83 TAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRSDTLTRSDISAATTRSFKFTFLG 142
Query: 117 DIL 119
D++
Sbjct: 143 DVV 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,730,865
Number of extensions: 346075
Number of successful extensions: 914
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 10
Length of query: 421
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 320
Effective length of database: 8,337,553
Effective search space: 2668016960
Effective search space used: 2668016960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)