BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0102400 Os01g0102400|J075015G12
(421 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0102400 Histone-fold domain containing protein 811 0.0
Os01g0580400 Histone-fold domain containing protein 714 0.0
Os01g0346900 Histone-fold domain containing protein 546 e-155
Os10g0191900 Histone-fold domain containing protein 129 3e-30
AK119652 129 4e-30
Os05g0304800 Histone-fold domain containing protein 120 2e-27
Os09g0480700 Similar to Transcription factor Hap5a-like pro... 100 2e-21
Os02g0170500 Histone-fold domain containing protein 95 9e-20
Os08g0496500 Histone-fold domain containing protein 94 3e-19
Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor ... 92 6e-19
Os03g0251350 Histone-fold domain containing protein 87 2e-17
Os08g0206500 Similar to Beta-expansin precursor 77 3e-14
>Os01g0102400 Histone-fold domain containing protein
Length = 421
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/421 (93%), Positives = 395/421 (93%)
Query: 1 MEQTLDVPRSLRLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNM 60
MEQTLDVPRSLRLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNM
Sbjct: 1 MEQTLDVPRSLRLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNM 60
Query: 61 MMSFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILH 120
MMSFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILH
Sbjct: 61 MMSFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILH 120
Query: 121 NHREKHKSTPCSTLTTKRCRLVDQPSTSRPPYQHQLPLFXXXXXXXXXXXXSLMPPISHY 180
NHREKHKSTPCSTLTTKRCRLVDQPSTSRPPYQHQLPLF SLMPPISHY
Sbjct: 121 NHREKHKSTPCSTLTTKRCRLVDQPSTSRPPYQHQLPLFAPTYTPAIPITPSLMPPISHY 180
Query: 181 IPFQYPSLSQEVSTMMASAPIVNRSMLLIHNIARGLGLQGNNISTFANNNIPDNIIGCSS 240
IPFQYPSLSQEVSTMMASAPIVNRSMLLIHNIARGLGLQGNNISTFANNNIPDNIIGCSS
Sbjct: 181 IPFQYPSLSQEVSTMMASAPIVNRSMLLIHNIARGLGLQGNNISTFANNNIPDNIIGCSS 240
Query: 241 PAVLASMMSPALLDVAGASLNPPNSHSICTMNMIXXXXXXXXXXXXXXVANQASLAPSEH 300
PAVLASMMSPALLDVAGASLNPPNSHSICTMNMI VANQASLAPSEH
Sbjct: 241 PAVLASMMSPALLDVAGASLNPPNSHSICTMNMINSSDPSGSSIGDINVANQASLAPSEH 300
Query: 301 FNPAILQESSCPSFLYNNNNDTIVVVPEGVDISGTMDVAGLVINGQEEEHERKTNVEQNE 360
FNPAILQESSCPSFLYNNNNDTIVVVPEGVDISGTMDVAGLVINGQEEEHERKTNVEQNE
Sbjct: 301 FNPAILQESSCPSFLYNNNNDTIVVVPEGVDISGTMDVAGLVINGQEEEHERKTNVEQNE 360
Query: 361 IYESIDIGIINASVADGNKCSIRWDELGTADDSLLDKFLEEFQARNDGVLHSGIVLHEDH 420
IYESIDIGIINASVADGNKCSIRWDELGTADDSLLDKFLEEFQARNDGVLHSGIVLHEDH
Sbjct: 361 IYESIDIGIINASVADGNKCSIRWDELGTADDSLLDKFLEEFQARNDGVLHSGIVLHEDH 420
Query: 421 S 421
S
Sbjct: 421 S 421
>Os01g0580400 Histone-fold domain containing protein
Length = 442
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/426 (84%), Positives = 370/426 (86%), Gaps = 9/426 (2%)
Query: 1 MEQTLDVPRSLRLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNM 60
MEQTLDVPRSLRL PKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKI SSQKGNM
Sbjct: 1 MEQTLDVPRSLRLLAPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIVSSQKGNM 60
Query: 61 MMSFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILH 120
MM+FDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIA+AIASTESYDFLVDILH
Sbjct: 61 MMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAKAIASTESYDFLVDILH 120
Query: 121 NHREKHKSTPCSTLTTKRCRLVDQPSTSRPPYQHQLPLFXXXXXXXXXXXXSLMPPISHY 180
NHR KHKSTPCSTLTTKRCRLVDQPSTS PYQHQLP F SLMPPISHY
Sbjct: 121 NHRVKHKSTPCSTLTTKRCRLVDQPSTSHMPYQHQLPQFAPTYTPAIPITPSLMPPISHY 180
Query: 181 IPFQYPSLSQEVSTMMASAPIVNRSMLLIHNIARGLGLQGNNISTFANNNIPDNIIGCSS 240
IPFQYPSLSQEVS MMASAPIVNRSMLLIHNIARGLGLQGNNISTFANNNIPDNI+GCSS
Sbjct: 181 IPFQYPSLSQEVSPMMASAPIVNRSMLLIHNIARGLGLQGNNISTFANNNIPDNIVGCSS 240
Query: 241 PAVLASMMSPALLDVAGASLNPPNSHSICTMNMIXXXXXXXXXXXXXXVANQASLAPSEH 300
P VLASMMSPALL+VAG SLNPPNSHSICTMNMI VANQASLAPS
Sbjct: 241 PTVLASMMSPALLEVAGTSLNPPNSHSICTMNMINSSDPSGSSIGDINVANQASLAPSGR 300
Query: 301 FNPAILQESSCPSFLYNNNNDTIVVVPEGVDISGTM----DVAGLVINGQEEEHERKTNV 356
FNPAIL+ESSCPSFL+ +NNDTIV +PEGVDISGTM DVA +VINGQ EEHER+TNV
Sbjct: 301 FNPAILRESSCPSFLH-SNNDTIVAIPEGVDISGTMDVASDVAAIVINGQ-EEHERETNV 358
Query: 357 E---QNEIYESIDIGIINASVADGNKCSIRWDELGTADDSLLDKFLEEFQARNDGVLHSG 413
E QNEIYESIDIGIINASVAD NK SI WDELG ADDSLLDKFLEEFQ RNDGVL +G
Sbjct: 359 EHHQQNEIYESIDIGIINASVADDNKYSISWDELGMADDSLLDKFLEEFQVRNDGVLRTG 418
Query: 414 IVLHED 419
I LHED
Sbjct: 419 IELHED 424
>Os01g0346900 Histone-fold domain containing protein
Length = 444
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/429 (68%), Positives = 323/429 (75%), Gaps = 13/429 (3%)
Query: 1 MEQTLDVPRSLRLPTPKAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNM 60
M+QTLDV RSLR P P AQQQMDEFWRDRQKEIE TKDFSEH IPMARLKKI SSQKGNM
Sbjct: 1 MKQTLDVHRSLRPPMPMAQQQMDEFWRDRQKEIEMTKDFSEHMIPMARLKKIVSSQKGNM 60
Query: 61 MMSFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILH 120
MM+FDMPAFLSKMCELFVQELA RAWA AQSHNRCIILD DIAEA+ASTESYDFLVDILH
Sbjct: 61 MMTFDMPAFLSKMCELFVQELAARAWACAQSHNRCIILDMDIAEAVASTESYDFLVDILH 120
Query: 121 NHREKHKSTPCSTLTTKRCRLVDQPSTSRPPYQHQLPLFXXXXXXXXXXXXSLMPPISHY 180
NH K KSTPCS +TKRCRLVDQPSTS P+QH LP F SLMP IS
Sbjct: 121 NHSVKQKSTPCS--STKRCRLVDQPSTSHIPHQHLLPQFAPTYTLAIPITPSLMPLISQC 178
Query: 181 IPFQYPSLSQEVSTMMASAPIVNRSMLLIHNIARGLGLQGNNISTFANNNIPDNIIGCSS 240
P +PSL QE +MA PIVNRSML I+NIARGLGLQGNNI+ ANNNI DNI+GCSS
Sbjct: 179 TPSSFPSLPQEKFPLMAPTPIVNRSMLFINNIARGLGLQGNNINAVANNNILDNIVGCSS 238
Query: 241 PAVLASMMSPALLDVAGASLNPPNSHSI-CTMNMIXXXXXXXXXXXXXXVANQASLAPSE 299
PAVLASMM+PALL +GA LNPPNS S CTM++I VANQA++APS
Sbjct: 239 PAVLASMMNPALLGPSGAPLNPPNSQSYNCTMDIINSNDACGSNNSSVIVANQANIAPSG 298
Query: 300 HFNPAILQESSCPSFLYNNNNDTIVVVPEGVDISGTM------DVAGLVINGQEEEHERK 353
HF P LQ SSC +FL++NNNDTI + EGVDIS M D A V +GQEE+HE++
Sbjct: 299 HFYPIALQ-SSCSTFLHSNNNDTITAILEGVDISDIMHVTSDVDAATKVFSGQEEQHEKE 357
Query: 354 TNVE---QNEIYESIDIGIINASVADGNKCSIRWDELGTADDSLLDKFLEEFQARNDGVL 410
TNVE QNEIYESIDI IINA+ DGNKCSI WDELG ADDSLLD FLEE Q R D V
Sbjct: 358 TNVEWHHQNEIYESIDIRIINATTRDGNKCSISWDELGMADDSLLDNFLEELQVRKDDVS 417
Query: 411 HSGIVLHED 419
+ I ++D
Sbjct: 418 DTRIAFNKD 426
>Os10g0191900 Histone-fold domain containing protein
Length = 335
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Query: 18 AQQQ--MDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCE 75
AQQ+ M++FWR Q++IE + E +P++R+K I +++G MM+S D PAF++K+CE
Sbjct: 25 AQQRHAMEKFWRMSQEQIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCE 84
Query: 76 LFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLT 135
LFVQEL +RAW A SHNR IIL TDIAEAI +TESY FL +++H H+ + P ++
Sbjct: 85 LFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFLANVVHGHQALGSNIPEIGVS 144
Query: 136 T-KRCRLVDQPSTSRPPYQHQL 156
KR +L + S PP Q+
Sbjct: 145 AWKRHKLDEMTSLCHPPQAVQV 166
>AK119652
Length = 335
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Query: 18 AQQQ--MDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCE 75
AQQ+ M++FWR Q++IE + E +P++R+K I +++G MM+S D PAF++K+CE
Sbjct: 25 AQQRHAMEKFWRMSQEQIEESAGNDELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCE 84
Query: 76 LFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLT 135
LFVQEL +RAW A SHNR IIL TDIAEAI +TESY FL +++H H+ + P ++
Sbjct: 85 LFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHFLANVVHGHQALGSNIPEIGVS 144
Query: 136 T-KRCRLVDQPSTSRPPYQHQL 156
KR +L + S PP Q+
Sbjct: 145 AWKRHKLDEMTSLCHPPQAVQV 166
>Os05g0304800 Histone-fold domain containing protein
Length = 327
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Query: 18 AQQQ--MDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCE 75
AQQ+ M+EFWR Q++IE + EH +P+ +K + + MM+S D P F++K+CE
Sbjct: 25 AQQRHAMEEFWRRSQEQIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCE 84
Query: 76 LFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLT 135
LFVQEL +RAW A SHNR IIL TDIAEAI +TESY FL ++L +H+ + P +
Sbjct: 85 LFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHFLGNVLRSHKALGSTAPDIDTS 144
Query: 136 TKRCRLVDQPSTSRPPYQ 153
++ +DQ ++ P Q
Sbjct: 145 ARKHIKLDQMTSLYHPTQ 162
>Os09g0480700 Similar to Transcription factor Hap5a-like protein
Length = 168
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 68/103 (66%)
Query: 17 KAQQQMDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCEL 76
++QQQ+ FW ++ +EIE T DF H +P+AR+KKI + + M++ + P ++ CE+
Sbjct: 26 RSQQQLQMFWAEQYREIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEM 85
Query: 77 FVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
F+ EL R WA A+ + R + +DIA AIA TE +DFLVDI+
Sbjct: 86 FILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 128
>Os02g0170500 Histone-fold domain containing protein
Length = 259
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%)
Query: 22 MDEFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQEL 81
+ EFW ++ +EIE T DF H++P+AR+KKI + + M+S + P +K CE+F+ EL
Sbjct: 84 LREFWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILEL 143
Query: 82 AVRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKS 128
+R+W + + R + DIA AI T+ YDFLVDI+ K +
Sbjct: 144 TLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEEG 190
>Os08g0496500 Histone-fold domain containing protein
Length = 205
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 62/95 (65%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW ++ +EIE T DF H +P+AR+KKI + + M++ + P ++ CE+F+ EL R
Sbjct: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
WA A+ + R + +DIA AIA TE +DFLVDI+
Sbjct: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIV 166
>Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC
Length = 250
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW +R +IE T DF H++P+AR+KKI + + M+S + P +K CE+F+ EL +R
Sbjct: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
+W + + R + DIA AI T+ YDFLVDI+
Sbjct: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIV 177
>Os03g0251350 Histone-fold domain containing protein
Length = 246
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 4/110 (3%)
Query: 25 FWRDRQKEIE--TTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELA 82
FW +++E E + DF H +P+AR+KKI + + M+S + P +K CELF+ EL
Sbjct: 49 FWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELT 108
Query: 83 VRAWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCS 132
+R+W A+ + R + D+A AIA T+ +DFLVDI+ RE+ K P S
Sbjct: 109 IRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIV--PREEAKEEPGS 156
>Os08g0206500 Similar to Beta-expansin precursor
Length = 484
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 59/101 (58%)
Query: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
FW D+ E+E +F +P+AR+KKI + + M++ + PA +K CE+F+ ++ +R
Sbjct: 317 FWADQMAEVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLR 376
Query: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREK 125
+W + R + +D+ I T+ +DFLVDI+ + + K
Sbjct: 377 SWQHTEEGRRRTLQRSDVEAVIKKTDIFDFLVDIITDDKMK 417
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,629,348
Number of extensions: 523926
Number of successful extensions: 1458
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 13
Length of query: 421
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 317
Effective length of database: 11,605,545
Effective search space: 3678957765
Effective search space used: 3678957765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)