Os10g0191900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os10g0191900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 274.49 | 0.778 | 2.96 | -0.114 | 0.0571 | -0.773 | 0.847 | -3.63 | -0.23 | 4.35 | 47.13 | 89 | -- | -- |
| 287.23 | 0.789 | 2.93 | -0.108 | 0.0251 | -0.376 | 0.379 | -- | -0.2 | 4.92 | 45.05 | 107 | -- | -- |
| 276.21 | 0.774 | 2.96 | -0.13 | 0.0731 | -0.792 | -- | -3.35 | -0.243 | 1.78 | 47.13 | 89 | -- | -- |
| 287.73 | 0.79 | 2.94 | -0.0916 | 0.0505 | -0.379 | -- | -- | -0.214 | 3.5 | 44.91 | 107 | -- | -- |
| 276.56 | 0.775 | 2.96 | -0.118 | -- | -0.737 | -- | -3.3 | -0.232 | -- | 47.11 | 89 | -- | -- |
| 287.94 | 0.796 | 2.93 | -0.132 | 0.0317 | -- | 0.791 | -- | -0.205 | 7.57 | -- | -- | -- | -- |
| 289.63 | 0.797 | 2.94 | -0.112 | 0.0422 | -- | -- | -- | -0.206 | 10.6 | -- | -- | -- | -- |
| 287.86 | 0.79 | 2.94 | -0.0855 | -- | -0.361 | -- | -- | -0.22 | -- | 46.7 | 87 | -- | -- |
| 287.89 | 0.79 | 2.94 | -- | 0.0628 | -0.406 | -- | -- | -0.211 | 2.89 | 45.09 | 107 | -- | -- |
| 289.74 | 0.795 | 2.94 | -0.113 | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
| 289.96 | 0.797 | 2.93 | -- | 0.043 | -- | -- | -- | -0.193 | 10.7 | -- | -- | -- | -- |
| 288.04 | 0.79 | 2.93 | -- | -- | -0.372 | -- | -- | -0.203 | -- | 46.64 | 88 | -- | -- |
| 290.07 | 0.795 | 2.93 | -- | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 258.96 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 9 |
| 2 | 259.20 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 6 |
| 17 | 263.32 | temperature | 20.0 | 10 | < th | dose independent | rect. | 15 | 6 |
| 31 | 264.84 | temperature | 20.0 | 90 | < th | dose independent | rect. | 12 | 8 |
| 33 | 265.05 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 35 | 266.10 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 38 | 267.36 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 44 | 267.66 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 48 | 267.67 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 83 | 268.37 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 84 | 268.44 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 91 | 268.73 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 92 | 268.73 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 101 | 269.08 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 102 | 269.11 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 128 | 269.83 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 11 |
| 131 | 269.85 | temperature | 20.0 | 90 | < th | dose independent | rect. | 14 | 2 |
| 136 | 269.93 | temperature | 20.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 162 | 270.24 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 10 | 7 |
| 174 | 270.59 | radiation | 40.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 179 | 270.70 | temperature | 20.0 | 90 | < th | dose independent | rect. | 12 | 4 |
| 208 | 271.40 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 300 | 271.40 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 423 | 272.04 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 441 | 272.49 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 451 | 272.49 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 461 | 272.52 | temperature | 30.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 569 | 274.24 | wind | 7.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 611 | 274.68 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 612 | 274.69 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 615 | 274.77 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 13 |
| 625 | 274.89 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 6 |
| 631 | 274.93 | temperature | 20.0 | 10 | > th | dose independent | sin | 19 | NA |
| 641 | 275.02 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 658 | 275.18 | wind | 3.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 663 | 275.27 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 664 | 275.27 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 674 | 275.39 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 677 | 275.44 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 685 | 275.53 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 703 | 275.78 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 11 |
| 758 | 276.20 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 771 | 276.30 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 14 |
| 778 | 276.36 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 786 | 276.43 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 11 | 2 |
| 794 | 276.50 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 816 | 276.61 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 826 | 276.72 | temperature | 20.0 | 10 | < th | dose independent | sin | 19 | NA |
| 829 | 276.73 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 835 | 276.79 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 7 |
| 837 | 276.80 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 861 | 276.97 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 11 | 9 |
| 877 | 277.05 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 5 |
| 914 | 277.20 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 12 |
| 951 | 277.31 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 6 |