Os02g0170500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os02g0170500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.26 | 0.279 | 9.41 | 0.349 | 1.42 | -0.755 | 0.571 | 0.534 | 0.336 | 1.7 | 78.67 | 818 | -- | -- |
| 35.63 | 0.278 | 9.42 | 0.324 | 1.43 | -0.723 | 0.66 | -- | 0.331 | 1.74 | 78.14 | 840 | -- | -- |
| 36.45 | 0.281 | 9.41 | 0.343 | 1.43 | -0.772 | -- | 0.774 | 0.337 | 1.71 | 79.39 | 821 | -- | -- |
| 37.35 | 0.285 | 9.42 | 0.297 | 1.42 | -0.707 | -- | -- | 0.328 | 1.77 | 78.28 | 821 | -- | -- |
| 61 | 0.366 | 9.39 | 0.226 | -- | -1.94 | -- | -0.0706 | 0.419 | -- | 199.3 | 8 | -- | -- |
| 45.6 | 0.317 | 9.4 | 0.211 | 1.37 | -- | 0.648 | -- | 0.373 | 2.48 | -- | -- | -- | -- |
| 47.1 | 0.321 | 9.4 | 0.194 | 1.37 | -- | -- | -- | 0.369 | 2.52 | -- | -- | -- | -- |
| 60.77 | 0.363 | 9.39 | 0.226 | -- | -1.89 | -- | -- | 0.417 | -- | 222.1 | 6 | -- | -- |
| 39.58 | 0.293 | 9.42 | -- | 1.42 | -0.674 | -- | -- | 0.315 | 1.77 | 81.65 | 821 | -- | -- |
| 157.27 | 0.586 | 9.39 | 0.252 | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
| 48.09 | 0.324 | 9.41 | -- | 1.37 | -- | -- | -- | 0.347 | 2.52 | -- | -- | -- | -- |
| 62.11 | 0.367 | 9.39 | -- | -- | -1.9 | -- | -- | 0.392 | -- | 228.9 | 6 | -- | -- |
| 158.94 | 0.588 | 9.4 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.72 | temperature | 30.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 5 | 33.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 6 | 33.95 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 7 | 33.96 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 11 | 34.19 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 12 | 34.19 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 27 | 34.59 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 37 | 34.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 38 | 34.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 42 | 34.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 43 | 34.96 | temperature | 10.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 57 | 35.08 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 8 | 12 |
| 64 | 35.11 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 71 | 35.18 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 75 | 35.18 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 118 | 35.34 | humidity | 90.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 130 | 35.37 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 164 | 35.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 216 | 35.53 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 23 |
| 220 | 35.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 239 | 35.58 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 20 |
| 260 | 35.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 337 | 35.72 | humidity | 80.0 | 720 | < th | dose dependent | no | NA | NA |
| 389 | 35.82 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 391 | 35.82 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 418 | 35.87 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 450 | 35.89 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 529 | 36.01 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 643 | 36.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 645 | 36.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 678 | 36.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 761 | 36.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 803 | 36.30 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 820 | 36.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 838 | 36.33 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 840 | 36.33 | humidity | 70.0 | 720 | > th | dose independent | rect. | 9 | 21 |
| 842 | 36.33 | humidity | 50.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 862 | 36.34 | humidity | 60.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 880 | 36.36 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 887 | 36.37 | temperature | 25.0 | 30 | < th | dose independent | sin | 23 | NA |
| 910 | 36.39 | radiation | 10.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 921 | 36.40 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 923 | 36.40 | humidity | 70.0 | 720 | > th | dose independent | rect. | 24 | 23 |
| 925 | 36.40 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 928 | 36.40 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 937 | 36.41 | humidity | 70.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 967 | 36.44 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 987 | 36.46 | temperature | 25.0 | 30 | > th | dose independent | sin | 23 | NA |
| 988 | 36.46 | humidity | 50.0 | 14400 | < th | dose independent | sin | 11 | NA |