BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0170500 Os02g0170500|J090080H23
(259 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0170500 Histone-fold domain containing protein 367 e-102
Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor ... 283 8e-77
Os09g0480700 Similar to Transcription factor Hap5a-like pro... 181 3e-46
Os08g0496500 Histone-fold domain containing protein 178 3e-45
Os03g0251350 Histone-fold domain containing protein 177 5e-45
Os08g0206500 Similar to Beta-expansin precursor 166 2e-41
Os04g0683400 104 5e-23
Os01g0580400 Histone-fold domain containing protein 96 3e-20
Os01g0102400 Histone-fold domain containing protein 95 6e-20
Os01g0346900 Histone-fold domain containing protein 92 4e-19
Os10g0191900 Histone-fold domain containing protein 82 6e-16
AK119652 81 8e-16
Os05g0304800 Histone-fold domain containing protein 80 1e-15
>Os02g0170500 Histone-fold domain containing protein
Length = 259
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/259 (72%), Positives = 189/259 (72%)
Query: 1 MEPSSQPQPVMGVATGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPTNPAQLSA 60
MEPSSQPQPVMGVATGGS FPTNPAQLSA
Sbjct: 1 MEPSSQPQPVMGVATGGSQAYPPPAAAYPPQAMVPGAPAVVPPGSQPSAPFPTNPAQLSA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXREFWANQMEEIEQTTDFKNHSLPLARIKKIMKADED 120
REFWANQMEEIEQTTDFKNHSLPLARIKKIMKADED
Sbjct: 61 QHQLVYQQAQQFHQQLQQQQQQQLREFWANQMEEIEQTTDFKNHSLPLARIKKIMKADED 120
Query: 121 VRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDI 180
VRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDI
Sbjct: 121 VRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDI 180
Query: 181 VPRDEMKEEGLGLPRVGLPPNVGGAADTYPYYYVPAQQGPGSGMMYGGQQGHPVTYVWXX 240
VPRDEMKEEGLGLPRVGLPPNVGGAADTYPYYYVPAQQGPGSGMMYGGQQGHPVTYVW
Sbjct: 181 VPRDEMKEEGLGLPRVGLPPNVGGAADTYPYYYVPAQQGPGSGMMYGGQQGHPVTYVWQQ 240
Query: 241 XXXXXXXXXXXXHSLPESS 259
HSLPESS
Sbjct: 241 PQEQQEEAPEEQHSLPESS 259
>Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC
Length = 250
Score = 283 bits (725), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 149/239 (62%), Positives = 166/239 (69%), Gaps = 7/239 (2%)
Query: 1 MEPSSQPQPVMGVATGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPTNPAQLSA 60
MEPSSQPQP +GV GGS FP NP QLSA
Sbjct: 1 MEPSSQPQPAIGVVAGGSQVYPAYRPAATVPTAPAVIPAGSQPAPS----FPANPDQLSA 56
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXREFWANQMEEIEQTTDFKNHSLPLARIKKIMKADED 120
++FWA ++ +IEQTTDFKNHSLPLARIKKIMKADED
Sbjct: 57 QHQLVYQQAQQFHQQLQQQQQRQLQQFWAERLVDIEQTTDFKNHSLPLARIKKIMKADED 116
Query: 121 VRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDI 180
VRMISAEAPV+FAKACE+FILELTLRSWMHTEENKRRTLQKNDIAAAITRTD+YDFLVDI
Sbjct: 117 VRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDI 176
Query: 181 VPRDEMKEEGLGLPRVGLPPNVGGAADTYPY-YYVPAQQGPGSGMMYGGQQGHPVTYVW 238
VPRD++KEEG+GLPR GLPP +G AD+YPY YYVP QQ PG+G+ YGGQQGHP Y+W
Sbjct: 177 VPRDDLKEEGVGLPRAGLPP-LGVPADSYPYGYYVPQQQVPGAGIAYGGQQGHP-GYLW 233
>Os09g0480700 Similar to Transcription factor Hap5a-like protein
Length = 168
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 102/140 (72%), Gaps = 14/140 (10%)
Query: 87 FWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLR 146
FWA Q EIE TTDFKNH+LPLARIKKIMKADEDVRMI+AEAPVVFA+ACE+FILELT R
Sbjct: 34 FWAEQYREIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 93
Query: 147 SWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPR---------DEMKEEGLGLPRVG 197
W H EENKRRTLQK+DIAAAI RT+++DFLVDIVPR G+ P G
Sbjct: 94 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDDAKDADAAAAAAAAGIPRPAAG 153
Query: 198 LPPNVGGAADTYPYYYVPAQ 217
+P A D YYYVP Q
Sbjct: 154 VP-----ATDPLAYYYVPQQ 168
>Os08g0496500 Histone-fold domain containing protein
Length = 205
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 101/139 (72%), Gaps = 13/139 (9%)
Query: 87 FWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLR 146
FWA Q EIE TTDFKNH+LPLARIKKIMKADEDVRMI+AEAPVVFA+ACE+FILELT R
Sbjct: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
Query: 147 SWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPR--------DEMKEEGLGLPRVGL 198
W H EENKRRTLQK+DIAAAI RT+++DFLVDIVPR G+ P GL
Sbjct: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEAKDAEAAAAVAAGIPHPAAGL 191
Query: 199 PPNVGGAADTYPYYYVPAQ 217
P A D YYYV Q
Sbjct: 192 P-----ATDPMAYYYVQPQ 205
>Os03g0251350 Histone-fold domain containing protein
Length = 246
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/105 (79%), Positives = 95/105 (90%), Gaps = 2/105 (1%)
Query: 87 FWANQMEEIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELT 144
FWA Q +E E+ + DFKNH LPLARIKKIMKADEDVRMISAEAPV+FAKACE+FILELT
Sbjct: 49 FWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELT 108
Query: 145 LRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEE 189
+RSW+H EENKRRTLQ+ND+AAAI RTD++DFLVDIVPR+E KEE
Sbjct: 109 IRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREEAKEE 153
>Os08g0206500 Similar to Beta-expansin precursor
Length = 484
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 100/128 (78%), Gaps = 2/128 (1%)
Query: 87 FWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLR 146
FWA+QM E+EQ T+FK +LPLARIKKIMKADEDV+MI+ EAP +FAKACE+FIL++TLR
Sbjct: 317 FWADQMAEVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLR 376
Query: 147 SWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEEGLGLPRVGL--PPNVGG 204
SW HTEE +RRTLQ++D+ A I +TDI+DFLVDI+ D+MK++G+G + P GG
Sbjct: 377 SWQHTEEGRRRTLQRSDVEAVIKKTDIFDFLVDIITDDKMKDDGMGSQAASMVSPYTSGG 436
Query: 205 AADTYPYY 212
++ Y
Sbjct: 437 MGFSFDLY 444
>Os04g0683400
Length = 125
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 63/95 (66%), Gaps = 14/95 (14%)
Query: 104 HSLPLARIKKIMK--------------ADEDVRMISAEAPVVFAKACEVFILELTLRSWM 149
H+LPLARIKKIMK RMIS EAPVVF+KACE+FI ELT R+W
Sbjct: 22 HALPLARIKKIMKRSAGDSSVVDGGGGGGGGARMISGEAPVVFSKACELFIAELTRRAWA 81
Query: 150 HTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRD 184
T E KRRT+ K D+AAA+ TD++DFLVD+V D
Sbjct: 82 ATLEGKRRTVHKEDVAAAVQNTDLFDFLVDVVTAD 116
>Os01g0580400 Histone-fold domain containing protein
Length = 442
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%)
Query: 86 EFWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTL 145
EFW ++ +EIE T DF H++P+AR+KKI+ + + M++ + P +K CE+F+ EL +
Sbjct: 24 EFWRDRQKEIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAV 83
Query: 146 RSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEEG 190
R+W + + R + DIA AI T+ YDFLVDI+ +K +
Sbjct: 84 RAWASAQSHNRCIILDTDIAKAIASTESYDFLVDILHNHRVKHKS 128
>Os01g0102400 Histone-fold domain containing protein
Length = 421
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%)
Query: 86 EFWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTL 145
EFW ++ +EIE T DF H++P+AR+KKI + + M+S + P +K CE+F+ EL +
Sbjct: 24 EFWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAV 83
Query: 146 RSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIV 181
R+W + + R + DIA AI T+ YDFLVDI+
Sbjct: 84 RAWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
>Os01g0346900 Histone-fold domain containing protein
Length = 444
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 65/105 (61%)
Query: 86 EFWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTL 145
EFW ++ +EIE T DF H +P+AR+KKI+ + + M++ + P +K CE+F+ EL
Sbjct: 24 EFWRDRQKEIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAA 83
Query: 146 RSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEEG 190
R+W + + R + DIA A+ T+ YDFLVDI+ +K++
Sbjct: 84 RAWACAQSHNRCIILDMDIAEAVASTESYDFLVDILHNHSVKQKS 128
>Os10g0191900 Histone-fold domain containing protein
Length = 335
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 85 REFWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELT 144
+FW E+IE++ + LP++R+K I+ A E M+SA+ P K CE+F+ EL
Sbjct: 32 EKFWRMSQEQIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELI 91
Query: 145 LRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEEGLGLPRVGL 198
LR+W+ + R + DIA AIT T+ Y FL ++V + G +P +G+
Sbjct: 92 LRAWVCANSHNREIILGTDIAEAITTTESYHFLANVVHGHQAL--GSNIPEIGV 143
>AK119652
Length = 335
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 85 REFWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELT 144
+FW E+IE++ LP++R+K I+ A E M+SA+ P K CE+F+ EL
Sbjct: 32 EKFWRMSQEQIEESAGNDELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELI 91
Query: 145 LRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEEGLGLPRVGL 198
LR+W+ + R + DIA AIT T+ Y FL ++V + G +P +G+
Sbjct: 92 LRAWVCANSHNREIILGTDIAEAITTTESYHFLANVVHGHQAL--GSNIPEIGV 143
>Os05g0304800 Histone-fold domain containing protein
Length = 327
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 86 EFWANQMEEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTL 145
EFW E+IE + H LP+ +K +++ D M+SA+ P K CE+F+ ELTL
Sbjct: 33 EFWRRSQEQIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQELTL 92
Query: 146 RSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIVPRDEMKEEGLGLPRVGLPPNVGGA 205
R+W+ + R + DIA AIT T+ Y FL +++ K G P +
Sbjct: 93 RAWVCANSHNRDIILGTDIAEAITTTESYHFLGNVLRSH--KALGSTAPDIDTSARKHIK 150
Query: 206 ADTYPYYYVPAQQGPGSGM 224
D Y P Q+ S +
Sbjct: 151 LDQMTSLYHPTQEMQASRL 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,273,196
Number of extensions: 283330
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 13
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)