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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0346900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0379) R2 : 0.075
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.547 (0.0933) R2dC : 0.0702 R2C : 0.0681
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.13 (0.0795) R2dN8 : 0.00695 R2N8 : 0.00476
σ : 0.713
deviance : 232.35
__
_____
C
peak time of C : 9.38
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
191.82 0.651 3.4 0.379 0.374 0.505 0.401 1.95 -0.0727 6.03 18.52 10 -- --
203.11 0.669 3.4 0.418 0.352 0.278 2.08 -- -0.0643 9.88 18.52 10 -- --
192.13 0.646 3.4 0.38 0.381 0.539 -- 1.96 -0.0727 5.49 18.63 9 -- --
213.42 0.68 3.4 0.48 0.379 0.568 -- -- -0.0596 5.41 17.99 8 -- --
199.54 0.658 3.4 0.393 -- 0.492 -- 1.96 -0.066 -- 18.63 9 -- --
207.5 0.675 3.4 0.431 0.541 -- 2.16 -- -0.0749 10.2 -- -- -- --
225.43 0.703 3.39 0.512 0.548 -- -- -- -0.0725 9.45 -- -- -- --
220.63 0.692 3.4 0.49 -- 0.514 -- -- -0.0545 -- 17.6 9 -- --
219.36 0.69 3.41 -- 0.384 0.591 -- -- -0.107 5.14 17.6 8 -- --
243.06 0.728 3.41 0.509 -- -- -- -- -0.0708 -- -- -- -- --
232.35 0.713 3.41 -- 0.547 -- -- -- -0.13 9.38 -- -- -- --
226.97 0.702 3.42 -- -- 0.519 -- -- -0.109 -- 17.6 9 -- --
249.89 0.738 3.42 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.83 wind 3.0 90 < th dose independent rect. 7 4
3 179.96 wind 3.0 90 < th dose independent rect. 7 8
4 179.98 wind 1.0 270 > th dose independent rect. 9 10
5 180.10 wind 5.0 270 < th dose dependent rect. 5 9
7 180.33 wind 5.0 90 < th dose dependent rect. 7 8
9 180.55 wind 3.0 270 < th dose independent rect. 5 9
14 180.70 wind 5.0 270 < th dose dependent rect. 6 4
44 182.95 humidity 80.0 270 > th dose independent rect. 6 4
45 183.02 wind 9.0 30 < th dose dependent rect. 7 20
49 183.13 wind 5.0 90 < th dose dependent rect. 7 20
53 183.25 wind 3.0 90 < th dose independent rect. 7 17
60 183.37 wind 9.0 270 < th dose dependent rect. 5 19
64 183.53 wind 5.0 270 < th dose independent rect. 19 15
65 183.53 wind 9.0 270 < th dose dependent rect. 6 17
69 183.67 humidity 70.0 270 > th dose dependent rect. 6 4
71 183.72 wind 5.0 90 < th dose dependent rect. 7 17
73 183.76 wind 3.0 90 < th dose independent rect. 7 20
82 183.95 temperature 20.0 270 > th dose independent rect. 6 4
86 184.05 temperature 15.0 270 > th dose independent rect. 5 19
92 184.18 temperature 15.0 270 > th dose independent rect. 4 23
107 184.49 temperature 15.0 270 > th dose independent rect. 19 15
121 184.66 temperature 15.0 270 > th dose independent rect. 4 21
138 184.95 radiation 10.0 10 < th dose independent rect. 3 6
139 184.96 radiation 20.0 30 < th dose dependent rect. 3 6
143 185.00 temperature 15.0 270 > th dose independent rect. 6 17
178 185.36 radiation 20.0 10 < th dose dependent rect. 3 11
180 185.38 temperature 15.0 90 > th dose independent rect. 7 20
183 185.41 temperature 25.0 270 < th dose independent rect. 24 5
196 185.52 precipitation 0.1 270 < th dose independent rect. 19 15
199 185.52 precipitation 0.1 270 < th dose dependent rect. 19 15
200 185.54 humidity 80.0 270 > th dose independent rect. 6 18
236 185.91 wind 7.0 270 < th dose independent rect. 10 9
248 186.06 temperature 10.0 270 > th dose independent rect. 10 9
249 186.06 atmosphere 1015.0 270 < th dose independent rect. 10 9
251 186.06 atmosphere 995.0 270 > th dose independent rect. 19 15
277 186.26 radiation 20.0 10 < th dose dependent rect. 3 9
285 186.34 humidity 50.0 270 > th dose independent rect. 19 15
315 186.60 temperature 10.0 10 > th dose dependent rect. 7 20
324 186.69 precipitation 0.1 270 < th dose independent rect. 10 9
325 186.69 precipitation 0.1 270 < th dose dependent rect. 10 9
354 186.87 radiation 40.0 270 < th dose independent rect. 19 15
357 186.90 radiation 20.0 30 < th dose independent rect. 24 9
383 187.03 radiation 20.0 10 < th dose independent rect. 3 11
402 187.14 radiation 1.0 270 < th dose dependent rect. 24 11
405 187.17 temperature 25.0 270 < th dose independent rect. 1 3
406 187.17 radiation 20.0 90 < th dose dependent sin 6 NA
426 187.27 wind 9.0 270 < th dose independent rect. 4 23
455 187.42 humidity 60.0 270 > th dose dependent rect. 7 1
463 187.45 wind 9.0 30 < th dose dependent rect. 3 4
465 187.46 wind 9.0 30 < th dose independent rect. 7 20
469 187.47 radiation 10.0 90 < th dose dependent sin 4 NA
471 187.47 wind 9.0 270 < th dose dependent rect. 19 15
473 187.49 radiation 20.0 10 < th dose dependent sin 5 NA
491 187.56 humidity 80.0 270 > th dose independent rect. 7 1
493 187.57 wind 9.0 270 < th dose independent rect. 3 1
494 187.57 temperature 10.0 270 > th dose independent rect. 3 1
496 187.57 temperature 30.0 270 < th dose independent rect. 3 1
497 187.57 humidity 50.0 270 > th dose independent rect. 3 1
500 187.57 atmosphere 995.0 270 > th dose independent rect. 3 1
501 187.57 atmosphere 1010.0 270 < th dose independent rect. 3 1
503 187.57 radiation 1.0 270 < th dose independent rect. 3 1
509 187.57 radiation 1.0 270 < th dose dependent rect. 3 1
535 187.64 precipitation 0.1 270 < th dose independent rect. 5 19
537 187.64 precipitation 0.1 270 < th dose dependent rect. 5 19
538 187.65 wind 9.0 270 < th dose independent rect. 24 5
539 187.65 temperature 10.0 270 > th dose independent rect. 24 5
541 187.65 humidity 50.0 270 > th dose independent rect. 24 5
544 187.65 atmosphere 995.0 270 > th dose independent rect. 24 5
545 187.65 atmosphere 1010.0 270 < th dose independent rect. 24 5
547 187.65 radiation 1.0 270 < th dose independent rect. 24 5
553 187.65 radiation 1.0 270 < th dose dependent rect. 24 5
558 187.66 wind 9.0 30 < th dose independent rect. 3 4
559 187.66 temperature 10.0 30 > th dose independent rect. 3 4
561 187.66 temperature 30.0 30 < th dose independent rect. 3 4
562 187.66 humidity 50.0 30 > th dose independent rect. 3 4
565 187.66 atmosphere 995.0 30 > th dose independent rect. 3 4
566 187.66 atmosphere 1015.0 30 < th dose independent rect. 3 4
600 187.81 radiation 10.0 90 > th dose independent sin 6 NA
606 187.82 radiation 20.0 90 < th dose dependent rect. 1 13
609 187.84 temperature 30.0 270 < th dose independent rect. 19 14
615 187.86 radiation 1.0 270 < th dose independent rect. 24 11
617 187.86 humidity 70.0 270 > th dose dependent rect. 6 18
627 187.89 humidity 50.0 30 > th dose dependent rect. 3 4
683 188.04 radiation 20.0 90 < th dose dependent rect. 1 7
686 188.06 radiation 20.0 10 < th dose independent sin 8 NA
700 188.09 precipitation 0.1 30 < th dose independent rect. 7 20
702 188.09 precipitation 0.1 30 < th dose dependent rect. 7 20
715 188.15 wind 9.0 270 < th dose dependent rect. 3 1
721 188.16 radiation 20.0 10 < th dose dependent rect. 3 23
723 188.18 precipitation 0.1 270 < th dose independent rect. 6 17
728 188.18 precipitation 0.1 270 < th dose dependent rect. 6 17
747 188.23 precipitation 0.1 270 < th dose independent rect. 24 5
762 188.23 precipitation 0.1 270 < th dose dependent rect. 24 5
764 188.24 precipitation 0.1 30 < th dose independent rect. 3 4
768 188.24 precipitation 0.1 30 < th dose dependent rect. 3 4
769 188.24 humidity 50.0 270 > th dose dependent rect. 24 5
788 188.26 temperature 10.0 270 > th dose dependent rect. 6 4
805 188.30 temperature 10.0 270 > th dose dependent rect. 3 1
816 188.33 radiation 30.0 10 < th dose dependent rect. 24 9
819 188.34 humidity 50.0 270 > th dose dependent rect. 3 1
821 188.35 temperature 10.0 10 > th dose dependent rect. 7 17
908 188.58 precipitation 0.1 270 < th dose independent rect. 4 21
911 188.58 precipitation 0.1 270 < th dose dependent rect. 4 21
971 188.72 temperature 15.0 270 > th dose independent rect. 10 20
981 188.76 radiation 40.0 270 < th dose independent rect. 6 18
985 188.76 wind 9.0 90 < th dose dependent rect. 21 14