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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0304800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histone-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0149) R2 : 0.00888
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0635 (0.0314) R2dN8 : 0.0115 R2N8 : 0.00888
σ : 0.281
deviance : 36.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.14 0.279 2.9 0.205 0.117 -0.162 0.0142 2 0.0838 8.54 29.99 734 -- --
35.36 0.279 2.93 -0.0155 0.117 0.0475 -0.09 -- 0.0579 7.62 28.7 580 -- --
35.14 0.276 2.9 0.205 0.117 -0.162 -- 1.99 0.0837 8.53 30 733 -- --
35.39 0.279 2.93 -0.0178 0.117 0.0482 -- -- 0.058 7.64 28.7 580 -- --
35.39 0.277 2.89 0.309 -- -0.225 -- 1.77 0.122 -- 29.4 913 -- --
35.49 0.279 2.93 -0.0044 0.112 -- -0.0836 -- 0.0616 8.47 -- -- -- --
35.51 0.279 2.93 -0.00689 0.112 -- -- -- 0.0617 8.56 -- -- -- --
36.05 0.281 2.93 -0.0152 -- 0.0558 -- -- 0.0596 -- 29.4 913 -- --
35.4 0.279 2.93 -- 0.116 0.0463 -- -- 0.0601 7.68 28.7 580 -- --
36.22 0.281 2.93 -0.00647 -- -- -- -- 0.0627 -- -- -- -- --
35.51 0.279 2.93 -- 0.112 -- -- -- 0.0625 8.56 -- -- -- --
36.06 0.281 2.93 -- -- 0.0546 -- -- 0.0613 -- 29.4 913 -- --
36.22 0.281 2.93 -- -- -- -- -- 0.0635 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.55 wind 1.0 30 < th dose independent rect. 10 1
2 30.55 temperature 10.0 1440 > th dose independent rect. 11 1
6 30.55 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 30.55 precipitation 0.1 1440 < th dose independent rect. 11 1
10 30.55 temperature 10.0 1440 > th dose independent rect. 12 23
13 30.55 wind 1.0 30 < th dose dependent rect. 10 1
14 30.55 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 30.69 temperature 25.0 30 > th dose dependent rect. 10 1
16 30.72 humidity 70.0 30 < th dose independent rect. 10 1
17 30.75 atmosphere 1010.0 30 < th dose independent rect. 10 1
19 30.79 temperature 25.0 30 > th dose independent rect. 10 1
21 30.83 radiation 20.0 30 > th dose independent rect. 10 1
23 30.86 radiation 40.0 30 < th dose independent rect. 10 1
24 30.87 atmosphere 1005.0 30 > th dose independent rect. 10 1
25 30.88 humidity 80.0 30 < th dose dependent rect. 10 1
29 30.91 atmosphere 995.0 30 > th dose dependent rect. 10 1
33 30.94 wind 5.0 30 < th dose dependent rect. 10 1
36 30.95 temperature 30.0 30 < th dose independent rect. 10 1
37 30.95 humidity 60.0 30 > th dose independent rect. 10 1
44 30.98 temperature 10.0 30 > th dose independent rect. 10 1
47 30.98 humidity 90.0 30 < th dose independent rect. 10 1
51 30.98 precipitation 0.1 30 < th dose independent rect. 10 1
52 30.98 temperature 10.0 30 > th dose independent rect. 11 23
53 30.98 precipitation 0.1 30 < th dose dependent rect. 10 1
54 31.00 wind 1.0 30 > th dose independent rect. 10 1
57 31.09 radiation 1.0 30 > th dose dependent rect. 10 1
60 31.17 radiation 40.0 30 < th dose dependent rect. 10 1
61 31.29 atmosphere 1015.0 30 < th dose dependent rect. 10 1
62 31.32 humidity 50.0 30 > th dose dependent rect. 10 1
65 31.49 wind 1.0 30 > th dose dependent rect. 10 1
106 32.32 wind 9.0 30 < th dose independent rect. 11 23
118 33.22 atmosphere 995.0 30 > th dose independent rect. 11 23
119 33.23 precipitation 0.1 30 < th dose independent rect. 11 23
120 33.23 precipitation 0.1 30 < th dose dependent rect. 11 23
133 33.81 radiation 10.0 10 > th dose independent rect. 6 1
159 33.81 radiation 10.0 10 > th dose dependent rect. 6 1
186 33.99 humidity 50.0 30 > th dose independent rect. 11 23
188 34.06 temperature 25.0 10 > th dose independent rect. 6 5
189 34.06 temperature 20.0 30 > th dose dependent rect. 6 5
190 34.13 wind 3.0 10 < th dose dependent rect. 6 1
195 34.14 atmosphere 1005.0 10 > th dose dependent rect. 6 1
200 34.15 temperature 30.0 30 < th dose independent rect. 11 23
206 34.16 temperature 25.0 30 > th dose dependent rect. 20 15
210 34.19 radiation 10.0 10 < th dose dependent rect. 6 1
211 34.19 wind 3.0 30 < th dose dependent rect. 6 5
215 34.21 atmosphere 995.0 720 > th dose independent rect. 11 8
216 34.21 humidity 80.0 30 > th dose dependent rect. 6 1
221 34.22 precipitation 0.1 720 < th dose independent rect. 19 16
224 34.22 precipitation 0.1 720 < th dose dependent rect. 19 16
225 34.23 wind 9.0 720 < th dose independent rect. 19 16
227 34.24 atmosphere 995.0 720 > th dose independent rect. 7 16
228 34.24 temperature 25.0 30 > th dose dependent rect. 22 13
233 34.26 precipitation 0.1 720 < th dose independent rect. 23 8
234 34.26 temperature 30.0 30 < th dose dependent rect. 6 1
240 34.26 precipitation 0.1 720 < th dose dependent rect. 23 8
243 34.27 wind 3.0 30 < th dose dependent rect. 6 8
247 34.28 wind 3.0 30 < th dose independent rect. 6 5
254 34.29 temperature 10.0 720 > th dose independent rect. 11 8
255 34.29 atmosphere 1015.0 720 < th dose independent rect. 11 8
256 34.29 precipitation 0.1 720 < th dose independent rect. 11 8
257 34.29 temperature 10.0 720 > th dose independent rect. 19 16
258 34.29 atmosphere 995.0 720 > th dose independent rect. 19 16
259 34.29 precipitation 0.1 720 < th dose dependent rect. 11 8
262 34.31 wind 9.0 720 < th dose independent rect. 23 8
263 34.31 humidity 50.0 720 > th dose independent rect. 19 16
264 34.31 atmosphere 1000.0 30 > th dose independent rect. 7 23
269 34.32 temperature 10.0 720 > th dose independent rect. 23 8
270 34.32 temperature 30.0 720 < th dose independent rect. 23 8
271 34.32 humidity 50.0 720 > th dose independent rect. 23 8
273 34.32 atmosphere 995.0 720 > th dose independent rect. 23 8
274 34.32 radiation 40.0 720 < th dose independent rect. 23 8
275 34.32 temperature 10.0 720 > th dose independent rect. 7 16
297 34.36 wind 1.0 90 > th dose independent rect. 6 1
302 34.37 humidity 90.0 90 < th dose independent rect. 3 4
310 34.38 wind 3.0 30 < th dose independent rect. 6 1
312 34.38 humidity 90.0 90 < th dose independent rect. 6 1
313 34.38 temperature 25.0 10 > th dose independent rect. 6 2
322 34.40 temperature 20.0 90 > th dose independent rect. 6 1
324 34.40 wind 9.0 4320 > th dose dependent rect. 13 1
328 34.41 wind 9.0 4320 < th dose independent rect. 7 1
330 34.41 atmosphere 1005.0 90 > th dose independent rect. 6 1
331 34.41 radiation 20.0 90 < th dose independent rect. 6 1
344 34.42 temperature 10.0 90 > th dose independent rect. 6 1
346 34.42 temperature 30.0 90 < th dose independent rect. 6 1
347 34.42 humidity 50.0 90 > th dose independent rect. 6 1
349 34.42 atmosphere 995.0 90 > th dose independent rect. 6 1
350 34.42 atmosphere 1015.0 90 < th dose independent rect. 6 1
353 34.42 radiation 40.0 1440 < th dose independent rect. 7 1
354 34.42 precipitation 0.1 90 < th dose independent rect. 6 1
363 34.42 temperature 25.0 30 > th dose independent rect. 1 10
370 34.42 temperature 10.0 90 > th dose independent rect. 7 23
374 34.42 precipitation 0.1 90 < th dose dependent rect. 6 1
390 34.44 temperature 10.0 90 > th dose dependent rect. 6 1
397 34.45 temperature 10.0 1440 > th dose independent rect. 7 1
401 34.45 temperature 30.0 1440 < th dose independent rect. 7 1
405 34.45 humidity 50.0 1440 > th dose independent rect. 7 1
410 34.45 atmosphere 995.0 1440 > th dose independent rect. 7 1
411 34.45 atmosphere 1015.0 1440 < th dose independent rect. 7 1
412 34.45 temperature 30.0 720 < th dose independent rect. 19 16
413 34.45 temperature 10.0 1440 > th dose independent rect. 8 23
450 34.46 wind 9.0 90 < th dose independent rect. 7 23
458 34.47 wind 3.0 10 < th dose independent rect. 6 7
462 34.47 radiation 40.0 90 < th dose dependent rect. 6 1
471 34.48 precipitation 0.1 30 < th dose independent rect. 7 23
473 34.48 precipitation 0.1 30 < th dose dependent rect. 7 23
492 34.49 humidity 90.0 30 < th dose independent rect. 3 8
535 34.53 atmosphere 1000.0 30 > th dose independent rect. 11 19
571 34.56 humidity 50.0 30 > th dose independent rect. 7 23
586 34.58 humidity 60.0 30 > th dose independent rect. 6 5
587 34.58 humidity 90.0 30 < th dose independent rect. 6 5
596 34.59 temperature 10.0 1440 > th dose independent rect. 7 5
600 34.59 atmosphere 995.0 1440 > th dose independent rect. 7 5
601 34.59 radiation 1.0 30 > th dose independent rect. 6 5
604 34.59 temperature 10.0 1440 > th dose independent rect. 12 19
611 34.59 atmosphere 995.0 30 > th dose dependent rect. 6 5
625 34.60 wind 1.0 720 > th dose independent rect. 11 8
639 34.61 precipitation 0.1 720 < th dose independent rect. 7 16
651 34.61 precipitation 0.1 720 < th dose dependent rect. 7 16
658 34.62 temperature 10.0 30 > th dose independent rect. 6 5
662 34.62 atmosphere 995.0 30 > th dose independent rect. 6 5
663 34.62 atmosphere 1015.0 30 < th dose independent rect. 6 5
664 34.62 precipitation 0.1 30 < th dose independent rect. 6 5
665 34.62 wind 9.0 30 < th dose independent rect. 11 19
666 34.62 temperature 10.0 30 > th dose independent rect. 11 19
667 34.62 precipitation 0.1 30 < th dose dependent rect. 6 5
670 34.62 atmosphere 995.0 30 > th dose dependent rect. 11 19
675 34.63 temperature 30.0 30 < th dose independent rect. 6 5
679 34.63 precipitation 0.1 30 < th dose independent rect. 11 19
685 34.63 precipitation 0.1 30 < th dose dependent rect. 11 19
707 34.65 wind 9.0 4320 > th dose independent rect. 13 1
708 34.65 wind 9.0 4320 < th dose independent rect. 13 1
714 34.65 wind 1.0 30 > th dose independent rect. 6 5
715 34.65 atmosphere 1005.0 30 > th dose independent rect. 6 5
719 34.65 radiation 10.0 30 > th dose independent rect. 17 18
775 34.66 humidity 50.0 30 > th dose independent rect. 11 19
795 34.67 atmosphere 1015.0 30 < th dose independent rect. 11 23
796 34.67 wind 1.0 90 > th dose dependent rect. 6 1
833 34.68 humidity 90.0 10 < th dose dependent rect. 6 1
839 34.68 temperature 10.0 10 > th dose dependent rect. 23 7
859 34.69 temperature 30.0 30 < th dose independent rect. 11 19
860 34.69 atmosphere 1015.0 30 < th dose dependent rect. 6 1
864 34.69 temperature 10.0 10 > th dose dependent rect. 6 17
923 34.72 radiation 30.0 10 < th dose independent rect. 6 5
945 34.73 wind 1.0 30 > th dose independent rect. 11 23
951 34.74 radiation 10.0 30 > th dose independent sin 10 NA
955 34.74 humidity 70.0 30 < th dose independent rect. 17 18
985 34.75 atmosphere 995.0 10 > th dose dependent rect. 8 22
990 34.76 atmosphere 1015.0 30 < th dose independent rect. 11 19