Os08g0496500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone-fold domain containing protein.
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Os08g0496500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.22 | 0.183 | 13.2 | 0.186 | 0.263 | 0.553 | 0.195 | 0.601 | 0.221 | 16.1 | 10.24 | 1342 | -- | -- |
| 15.59 | 0.184 | 13.2 | 0.0391 | 0.223 | 0.538 | 0.162 | -- | 0.175 | 15.5 | 9.918 | 2146 | -- | -- |
| 15.31 | 0.182 | 13.2 | 0.183 | 0.26 | 0.548 | -- | 0.571 | 0.221 | 16.4 | 10.36 | 1383 | -- | -- |
| 15.65 | 0.184 | 13.2 | 0.0414 | 0.218 | 0.538 | -- | -- | 0.185 | 15.7 | 10.5 | 2110 | -- | -- |
| 17.67 | 0.196 | 13.2 | 0.171 | -- | 0.564 | -- | 0.603 | 0.213 | -- | 9.926 | 1867 | -- | -- |
| 20.75 | 0.214 | 13.2 | 0.23 | 0.224 | -- | 0.101 | -- | 0.288 | 16.6 | -- | -- | -- | -- |
| 20.78 | 0.213 | 13.2 | 0.231 | 0.225 | -- | -- | -- | 0.289 | 16.7 | -- | -- | -- | -- |
| 17.97 | 0.197 | 13.2 | 0.0356 | -- | 0.567 | -- | -- | 0.177 | -- | 9.471 | 1883 | -- | -- |
| 15.69 | 0.185 | 13.2 | -- | 0.22 | 0.554 | -- | -- | 0.177 | 15.7 | 10.53 | 2128 | -- | -- |
| 23.47 | 0.226 | 13.2 | 0.222 | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
| 22.18 | 0.22 | 13.2 | -- | 0.221 | -- | -- | -- | 0.263 | 16.7 | -- | -- | -- | -- |
| 18 | 0.198 | 13.2 | -- | -- | 0.582 | -- | -- | 0.171 | -- | 9.698 | 1887 | -- | -- |
| 24.78 | 0.232 | 13.2 | -- | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 15.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 6 | 15.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 10 | 15.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 12 | 15.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 25 | 15.25 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 27 | 15.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 86 | 15.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 131 | 15.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 148 | 15.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 164 | 15.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 230 | 15.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 281 | 15.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 283 | 15.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 337 | 15.30 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 338 | 15.30 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 339 | 15.30 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 342 | 15.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 344 | 15.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 346 | 15.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 16 |
| 391 | 15.31 | temperature | 10 | 1440 | > th | dose dependent | sin | 16 | NA |
| 452 | 15.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 514 | 15.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 515 | 15.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 570 | 15.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 574 | 15.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 631 | 15.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 642 | 15.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 734 | 15.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 825 | 15.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 827 | 15.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 858 | 15.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 975 | 15.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |