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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0206500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-expansin precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0384) R2 : 0.546
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.49 (0.104) R2dE : 0.551 R2E : 0.539
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.0811) R2dN8 : 0.00718 R2N8 : -0.00482
σ : 0.722
deviance : 240.23
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C
peak time of C : --
E
wheather : temperature
threshold : 29.6
memory length : 338
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.6
open length of G : 19.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.7 0.69 3.42 0.554 2.85 -1.57 1.1 0.35 0.15 14.8 29.6 300 4.01 16.6
215.62 0.684 3.41 0.563 2.85 -1.58 1.4 -- 0.155 14.8 29.6 310 4 16.5
216.75 0.686 3.42 0.534 2.85 -1.61 -- 1.21 0.16 14.8 29.53 311 3.98 16.6
222.13 0.694 3.41 0.645 2.85 -1.61 -- -- 0.146 14.7 29.52 317 3.83 16.6
494.78 1.04 3.48 0.637 -- -0.821 -- -1.13 -0.0661 -- 22 239 6.4 17
301.2 0.814 3.43 0.845 1.88 -- 1.99 -- 0.13 15.5 -- -- -- --
313.42 0.829 3.42 0.879 1.89 -- -- -- 0.142 15.5 -- -- -- --
261.09 0.753 3.46 0.528 -- -2.8 -- -- -0.061 -- 29.6 561 11 19.6
231.97 0.709 3.4 -- 2.88 -1.65 -- -- 0.0995 14.7 29.5 330 3.64 16.7
512.83 1.06 3.42 0.799 -- -- -- -- 0.0918 -- -- -- -- --
333.79 0.855 3.44 -- 1.87 -- -- -- 0.0439 15.5 -- -- -- --
240.23 0.722 3.37 -- -- -2.49 -- -- 0.16 -- 29.6 338 13.6 19.8
529.7 1.07 3.44 -- -- -- -- -- 0.00307 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 222.81 temperature 30 270 < th dose independent rect. 4 17
2 222.88 temperature 30 270 < th dose independent rect. 15 7
4 223.63 temperature 15 270 > th dose dependent rect. 9 8
7 224.67 temperature 10 270 > th dose dependent rect. 11 15
18 226.85 temperature 30 270 < th dose independent rect. 15 20
50 230.83 temperature 25 90 > th dose dependent sin 18 NA
66 231.74 temperature 25 270 > th dose dependent rect. 10 16
78 232.28 temperature 25 270 > th dose dependent sin 22 NA
94 233.00 radiation 10 270 < th dose dependent sin 20 NA
132 233.99 temperature 25 270 > th dose dependent rect. 22 20
140 234.14 radiation 10 270 < th dose dependent rect. 8 13
152 234.39 radiation 10 270 < th dose dependent rect. 13 9
170 234.83 radiation 1 270 < th dose independent sin 22 NA
175 234.96 humidity 70 270 > th dose independent rect. 5 16
179 235.04 humidity 50 270 > th dose dependent rect. 5 16
183 235.10 temperature 10 90 > th dose dependent sin 19 NA
196 235.29 humidity 60 270 > th dose independent rect. 15 7
223 235.68 humidity 70 270 > th dose independent rect. 16 18
229 235.78 radiation 1 90 > th dose independent sin 18 NA
230 235.78 radiation 1 270 < th dose independent rect. 8 13
232 235.79 humidity 70 90 > th dose independent sin 18 NA
239 235.85 radiation 1 270 > th dose independent sin 22 NA
269 236.23 radiation 1 90 < th dose independent sin 18 NA
273 236.26 humidity 50 270 > th dose dependent rect. 15 7
300 236.60 humidity 70 270 > th dose independent rect. 15 20
311 236.77 temperature 30 270 > th dose independent rect. 11 6
369 237.49 temperature 30 270 < th dose independent sin 23 NA
375 237.69 radiation 10 270 < th dose independent rect. 14 8
389 237.91 humidity 50 270 > th dose dependent rect. 16 5
415 238.26 temperature 10 270 > th dose dependent rect. 22 19
434 238.47 temperature 10 270 > th dose dependent rect. 21 21
438 238.52 temperature 30 270 > th dose independent sin 22 NA
470 238.97 temperature 30 270 > th dose independent rect. 11 22
559 239.59 humidity 70 90 < th dose independent sin 18 NA
565 239.67 temperature 30 270 < th dose independent no NA NA
577 239.75 temperature 30 30 < th dose dependent sin 19 NA
625 240.08 temperature 25 270 > th dose dependent no NA NA
640 240.16 radiation 1 270 > th dose independent rect. 9 10
710 240.68 temperature 30 270 < th dose dependent rect. 15 6
711 240.70 temperature 30 270 > th dose independent no NA NA
956 241.76 radiation 1 90 < th dose independent rect. 8 17