Os06g0667100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC.
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Os06g0667100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.91 | 0.339 | 8.76 | 0.861 | 0.113 | -1.49 | -1.36 | -1.5 | 0.0116 | 1.87 | 24.1 | 1051 | -- | -- |
| 54.18 | 0.343 | 8.79 | 0.635 | 0.114 | -1.28 | -1.1 | -- | -0.0434 | 2.23 | 24.8 | 1040 | -- | -- |
| 58.49 | 0.356 | 8.77 | 0.777 | 0.112 | -1.43 | -- | -0.782 | -0.00943 | 2.48 | 24.21 | 1044 | -- | -- |
| 59.1 | 0.358 | 8.79 | 0.661 | 0.109 | -1.31 | -- | -- | -0.0427 | 2.74 | 24.61 | 1001 | -- | -- |
| 59.2 | 0.358 | 8.77 | 0.773 | -- | -1.43 | -- | -0.717 | -0.0131 | -- | 24.4 | 1028 | -- | -- |
| 78.13 | 0.414 | 8.73 | 1 | 0.249 | -- | -1.2 | -- | 0.221 | 1.8 | -- | -- | -- | -- |
| 83.68 | 0.428 | 8.73 | 1.04 | 0.248 | -- | -- | -- | 0.229 | 1.23 | -- | -- | -- | -- |
| 59.76 | 0.36 | 8.79 | 0.652 | -- | -1.35 | -- | -- | -0.0499 | -- | 24.91 | 1009 | -- | -- |
| 67.31 | 0.382 | 8.82 | -- | 0.144 | -1.44 | -- | -- | -0.183 | 2.04 | 24.35 | 2511 | -- | -- |
| 87.47 | 0.437 | 8.72 | 1.05 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 112.24 | 0.496 | 8.75 | -- | 0.266 | -- | -- | -- | 0.113 | 1.38 | -- | -- | -- | -- |
| 68.35 | 0.385 | 8.83 | -- | -- | -1.45 | -- | -- | -0.199 | -- | 24.98 | 2507 | -- | -- |
| 116.59 | 0.504 | 8.75 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 14 | 43.08 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 22 | 43.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 32 | 43.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 33 | 43.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 62 | 44.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 80 | 44.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 134 | 46.00 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 355 | 49.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 461 | 50.25 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 5 |
| 641 | 51.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 703 | 52.22 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 10 |
| 736 | 52.47 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 7 |
| 738 | 52.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 780 | 52.68 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 19 |
| 800 | 52.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 820 | 52.84 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 838 | 52.87 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |