BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0667100 Os06g0667100|AK105079
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor ... 334 4e-92
Os02g0170500 Histone-fold domain containing protein 263 1e-70
Os09g0480700 Similar to Transcription factor Hap5a-like pro... 171 5e-43
Os08g0496500 Histone-fold domain containing protein 171 6e-43
Os03g0251350 Histone-fold domain containing protein 170 8e-43
Os08g0206500 Similar to Beta-expansin precursor 155 2e-38
Os04g0683400 104 8e-23
Os01g0580400 Histone-fold domain containing protein 93 2e-19
Os01g0102400 Histone-fold domain containing protein 92 4e-19
Os01g0346900 Histone-fold domain containing protein 90 1e-18
Os10g0191900 Histone-fold domain containing protein 77 8e-15
AK119652 77 1e-14
Os05g0304800 Histone-fold domain containing protein 75 6e-14
>Os06g0667100 Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC
Length = 250
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 173/233 (74%), Positives = 173/233 (74%)
Query: 1 MEPSSQPQPAIGVVAGGSQXXXXXXXXXXXXXXXXXXXXGSQPAPSFPANPDQLSAXXXX 60
MEPSSQPQPAIGVVAGGSQ GSQPAPSFPANPDQLSA
Sbjct: 1 MEPSSQPQPAIGVVAGGSQVYPAYRPAATVPTAPAVIPAGSQPAPSFPANPDQLSAQHQL 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXFWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMI 120
FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMI
Sbjct: 61 VYQQAQQFHQQLQQQQQRQLQQFWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMI 120
Query: 121 SAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRD 180
SAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRD
Sbjct: 121 SAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRD 180
Query: 181 DLKEEGVGLPRAGLPPLGVPADSXXXXXXXXXXXXXXAGIAYGGQQGHPGYLW 233
DLKEEGVGLPRAGLPPLGVPADS AGIAYGGQQGHPGYLW
Sbjct: 181 DLKEEGVGLPRAGLPPLGVPADSYPYGYYVPQQQVPGAGIAYGGQQGHPGYLW 233
>Os02g0170500 Histone-fold domain containing protein
Length = 259
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/239 (59%), Positives = 159/239 (66%), Gaps = 7/239 (2%)
Query: 1 MEPSSQPQPAIGVVAGGSQXXXXXXXXXXXXXXX----XXXXXGSQPAPSFPANPDQLSA 56
MEPSSQPQP +GV GGSQ GSQP+ FP NP QLSA
Sbjct: 1 MEPSSQPQPVMGVATGGSQAYPPPAAAYPPQAMVPGAPAVVPPGSQPSAPFPTNPAQLSA 60
Query: 57 XXXXXXXXXXXXXXXXXXXXXXXXXXFWAERLVDIEQTTDFKNHSLPLARIKKIMKADED 116
FWA ++ +IEQTTDFKNHSLPLARIKKIMKADED
Sbjct: 61 QHQLVYQQAQQFHQQLQQQQQQQLREFWANQMEEIEQTTDFKNHSLPLARIKKIMKADED 120
Query: 117 VRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDI 176
VRMISAEAPV+FAKACE+FILELTLRSWMHTEENKRRTLQKNDIAAAITRTD+YDFLVDI
Sbjct: 121 VRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDI 180
Query: 177 VPRDDLKEEGVGLPRAGLPP-LGVPADSXXXXXXXXXXXXXXAGIAYGGQQGHP-GYLW 233
VPRD++KEEG+GLPR GLPP +G AD+ +G+ YGGQQGHP Y+W
Sbjct: 181 VPRDEMKEEGLGLPRVGLPPNVGGAADT-YPYYYVPAQQGPGSGMMYGGQQGHPVTYVW 238
>Os09g0480700 Similar to Transcription factor Hap5a-like protein
Length = 168
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 98/126 (77%), Gaps = 10/126 (7%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FWAE+ +IE TTDFKNH+LPLARIKKIMKADEDVRMI+AEAPV+FA+ACE+FILELT R
Sbjct: 34 FWAEQYREIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 93
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPR-------DDLKEEGVGLPRAGLP 195
W H EENKRRTLQK+DIAAAI RT+++DFLVDIVPR G+PR P
Sbjct: 94 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDDAKDADAAAAAAAAGIPR---P 150
Query: 196 PLGVPA 201
GVPA
Sbjct: 151 AAGVPA 156
>Os08g0496500 Histone-fold domain containing protein
Length = 205
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 96/121 (79%), Gaps = 8/121 (6%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FWAE+ +IE TTDFKNH+LPLARIKKIMKADEDVRMI+AEAPV+FA+ACE+FILELT R
Sbjct: 72 FWAEQYREIEHTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHR 131
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPR--------DDLKEEGVGLPRAGL 194
W H EENKRRTLQK+DIAAAI RT+++DFLVDIVPR G+ P AGL
Sbjct: 132 GWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEAKDAEAAAAVAAGIPHPAAGL 191
Query: 195 P 195
P
Sbjct: 192 P 192
>Os03g0251350 Histone-fold domain containing protein
Length = 246
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/105 (76%), Positives = 94/105 (89%), Gaps = 2/105 (1%)
Query: 83 FWAERLVDIEQTT--DFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELT 140
FWA + + E+ + DFKNH LPLARIKKIMKADEDVRMISAEAPV+FAKACE+FILELT
Sbjct: 49 FWAYQRQEAERASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELT 108
Query: 141 LRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLKEE 185
+RSW+H EENKRRTLQ+ND+AAAI RTD++DFLVDIVPR++ KEE
Sbjct: 109 IRSWLHAEENKRRTLQRNDVAAAIARTDVFDFLVDIVPREEAKEE 153
>Os08g0206500 Similar to Beta-expansin precursor
Length = 484
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 94/112 (83%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FWA+++ ++EQ T+FK +LPLARIKKIMKADEDV+MI+ EAP +FAKACE+FIL++TLR
Sbjct: 317 FWADQMAEVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLR 376
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLKEEGVGLPRAGL 194
SW HTEE +RRTLQ++D+ A I +TD++DFLVDI+ D +K++G+G A +
Sbjct: 377 SWQHTEEGRRRTLQRSDVEAVIKKTDIFDFLVDIITDDKMKDDGMGSQAASM 428
>Os04g0683400
Length = 125
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 63/95 (66%), Gaps = 14/95 (14%)
Query: 100 HSLPLARIKKIMK--------------ADEDVRMISAEAPVIFAKACEIFILELTLRSWM 145
H+LPLARIKKIMK RMIS EAPV+F+KACE+FI ELT R+W
Sbjct: 22 HALPLARIKKIMKRSAGDSSVVDGGGGGGGGARMISGEAPVVFSKACELFIAELTRRAWA 81
Query: 146 HTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRD 180
T E KRRT+ K D+AAA+ TD++DFLVD+V D
Sbjct: 82 ATLEGKRRTVHKEDVAAAVQNTDLFDFLVDVVTAD 116
>Os01g0580400 Histone-fold domain containing protein
Length = 442
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FW +R +IE T DF H++P+AR+KKI+ + + M++ + P +K CE+F+ EL +R
Sbjct: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAVR 84
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLKEEGV 187
+W + + R + DIA AI T+ YDFLVDI+ +K +
Sbjct: 85 AWASAQSHNRCIILDTDIAKAIASTESYDFLVDILHNHRVKHKST 129
>Os01g0102400 Histone-fold domain containing protein
Length = 421
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FW +R +IE T DF H++P+AR+KKI + + M+S + P +K CE+F+ EL +R
Sbjct: 25 FWRDRQKEIETTKDFSEHAIPMARLKKIASSQKGNMMMSFDMPAFLSKMCELFVQELAVR 84
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIV 177
+W + + R + DIA AI T+ YDFLVDI+
Sbjct: 85 AWASAQSHNRCIILDTDIAEAIASTESYDFLVDIL 119
>Os01g0346900 Histone-fold domain containing protein
Length = 444
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FW +R +IE T DF H +P+AR+KKI+ + + M++ + P +K CE+F+ EL R
Sbjct: 25 FWRDRQKEIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAAR 84
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLKEEGV 187
+W + + R + DIA A+ T+ YDFLVDI+ +K++
Sbjct: 85 AWACAQSHNRCIILDMDIAEAVASTESYDFLVDILHNHSVKQKST 129
>Os10g0191900 Histone-fold domain containing protein
Length = 335
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FW IE++ + LP++R+K I+ A E M+SA+ P K CE+F+ EL LR
Sbjct: 34 FWRMSQEQIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILR 93
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLKEEGVGLPRAGLPPLGVPA 201
+W+ + R + DIA AIT T+ Y FL ++V G + +P +GV A
Sbjct: 94 AWVCANSHNREIILGTDIAEAITTTESYHFLANVV-------HGHQALGSNIPEIGVSA 145
>AK119652
Length = 335
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FW IE++ LP++R+K I+ A E M+SA+ P K CE+F+ EL LR
Sbjct: 34 FWRMSQEQIEESAGNDELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILR 93
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLKEEGVGLPRAGLPPLGVPA 201
+W+ + R + DIA AIT T+ Y FL ++V G + +P +GV A
Sbjct: 94 AWVCANSHNREIILGTDIAEAITTTESYHFLANVV-------HGHQALGSNIPEIGVSA 145
>Os05g0304800 Histone-fold domain containing protein
Length = 327
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 83 FWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLR 142
FW IE + H LP+ +K +++ D M+SA+ P K CE+F+ ELTLR
Sbjct: 34 FWRRSQEQIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQELTLR 93
Query: 143 SWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIV 177
+W+ + R + DIA AIT T+ Y FL +++
Sbjct: 94 AWVCANSHNRDIILGTDIAEAITTTESYHFLGNVL 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,754,906
Number of extensions: 227810
Number of successful extensions: 419
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 13
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)